View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11767_high_11 (Length: 426)

Name: NF11767_high_11
Description: NF11767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11767_high_11
NF11767_high_11
[»] chr8 (14 HSPs)
chr8 (14-411)||(36210479-36210876)
chr8 (14-193)||(36189411-36189590)
chr8 (195-381)||(36189025-36189210)
chr8 (18-192)||(36197577-36197752)
chr8 (14-104)||(36189830-36189920)
chr8 (14-104)||(36189665-36189755)
chr8 (18-104)||(36210951-36211037)
chr8 (18-104)||(36211110-36211196)
chr8 (18-104)||(36211269-36211355)
chr8 (18-104)||(36211428-36211514)
chr8 (18-104)||(36189995-36190081)
chr8 (18-104)||(36190151-36190237)
chr8 (18-104)||(36211587-36211673)
chr8 (339-388)||(36197393-36197442)


Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 14 - 411
Target Start/End: Complemental strand, 36210876 - 36210479
Alignment:
Q  14 agagaacaggtttgacacttttacagtgagtataaactataaagtaaagtgagaagatcaaccattaatattcttgattttacactctaaaatgagtatc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36210876 agagaacaggtttgacacttttacagtgagtataaactataaagtaaagtgagaagatcaaccattaatattcttgattttacactctaaaatgagtatc 36210777  T
Q  114 tcactttgaatgagtcaactcctttaaaaatattctattgtgtatcattttcctatcaaacgattgaatgagttaattttgtttaaccaacttcgaatcc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36210776 tcactttgaatgagtcaactcctttaaaaatattctattgtgtatcattttcctatcaaacgattgaatgagttaattttgtttaaccaacttcgaatcc 36210677  T
Q  214 tgaagacacaaacacatcttagttccacacctccaaattttttatttnnnnnnnctcacgctcacacctccaaagttttgtttctgtgacattgaagata 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  36210676 tgaagacacaaacacatcttagttccacacctccaaattttttatttaaaaaaactcacgctcacacctccaaagttttgtttctgtgacattgaagata 36210577  T
Q  314 aaaataatcattatgtcgtttcatcaaaaaattgtgttgtaacttcttgtgccattatgtcgtttcagcggggatgggatttgatatgtgggagtagt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36210576 aaaataatcattatgtcgtttcatcaaaaaattgtgttgtaacttcttgtgccattatgtcgtttcagcggggatgggatttgatatgtgggagtagt 36210479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 36189590 - 36189411
Alignment:
Q  14 agagaacaggtttgacacttttacagtgagtataaactataaagtaaagtgagaagatcaaccattaatattcttgattttacactctaaaatgagtatc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  36189590 agagaacaggtttgacacttttacagtgagtataaactataaagtaaagtgagaagatcaaccgttaatattcttgattttacactctaaaatgagtgtc 36189491  T
Q  114 tcactttgaatgagtcaactcctttaaaaatattctattgtgtatcattttcctatcaaacgattgaatgagttaatttt 193  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36189490 tcactttgaatgggtcaactcctttaaaaatattctattgtgtatcattttcctatcaaacgattgaatgagttaatttt 36189411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 195 - 381
Target Start/End: Complemental strand, 36189210 - 36189025
Alignment:
Q  195 tttaaccaacttcgaatcctgaagacacaaacacatcttagttccacacctccaaattttttatttnnnnnnn-ctcacgctcacacctccaaagttttg 293  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||| |||  |||||||||    
T  36189210 tttaaccaacttcaaatcctgaagacacaaacacatcttagttccacacctccaaattttttattttttttaaactcacgctcactcct--aaagttttg 36189113  T
Q  294 tttctgtgacattgaagataaaaataatcattatgtcgtttcatcaaaaaattgtgttgtaacttcttgtgccattatgtcgtttcag 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36189112 tttctgtgacattgaagataaaaataatcattatgtcgtttcatcaaaaaattgtgttgtaacttcttgtgctattatgtcgtttcag 36189025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 36197752 - 36197577
Alignment:
Q  18 aacaggtttgacacttttacagtgagtataaactataaagtaaagtgagaagatcaaccattaatattcttgattttacactctaaaatgagtatctcac 117  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  36197752 aacaggtttgacacttttacagtgagtatcaactatagagtaaagtgagaagatcaactgttaatattcttgattttaccctctaaaatgagtatctcac 36197653  T
Q  118 tttgaatgagtcaactcctttaaaaatat-tctattgtgtatcattttcctatcaaacgattgaatgagttaattt 192  Q
    |||||| ||||||| |||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||    
T  36197652 tttgaacgagtcaaatcctttaaaaatatatctattgtgtatcctttttctatcaaacgattgaatgagttaattt 36197577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 36189920 - 36189830
Alignment:
Q  14 agagaacaggtttgacacttttacagtgagtataaactataaagtaaagtgagaagatcaaccattaatattcttgattttacactctaaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36189920 agagaacaggtttgacacttttacagtgagtataaactataaagtaaagtgagaagatcaaccgttaatattcttgattttacactctaaa 36189830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 36189755 - 36189665
Alignment:
Q  14 agagaacaggtttgacacttttacagtgagtataaactataaagtaaagtgagaagatcaaccattaatattcttgattttacactctaaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  36189755 agagaacaggtttgacacttttacagtgagtataaactataaagtaaagtgagaagatcaactgttaatattcttgattttacactctaaa 36189665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 36211037 - 36210951
Alignment:
Q  18 aacaggtttgacacttttacagtgagtataaactataaagtaaagtgagaagatcaaccattaatattcttgattttacactctaaa 104  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36211037 aacaggtttgacacttttatagcgagtataaactataaagtaaagtgagaagatcaaccgttaatattcttgattttacactctaaa 36210951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 36211196 - 36211110
Alignment:
Q  18 aacaggtttgacacttttacagtgagtataaactataaagtaaagtgagaagatcaaccattaatattcttgattttacactctaaa 104  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36211196 aacaggtttgacacttttatagcgagtataaactataaagtaaagtgagaagatcaaccgttaatattcttgattttacactctaaa 36211110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 36211355 - 36211269
Alignment:
Q  18 aacaggtttgacacttttacagtgagtataaactataaagtaaagtgagaagatcaaccattaatattcttgattttacactctaaa 104  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36211355 aacaggtttgacacttttatagcgagtataaactataaagtaaagtgagaagatcaaccgttaatattcttgattttacactctaaa 36211269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 36211514 - 36211428
Alignment:
Q  18 aacaggtttgacacttttacagtgagtataaactataaagtaaagtgagaagatcaaccattaatattcttgattttacactctaaa 104  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36211514 aacaggtttgacacttttatagcgagtataaactataaagtaaagtgagaagatcaaccgttaatattcttgattttacactctaaa 36211428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 36190081 - 36189995
Alignment:
Q  18 aacaggtttgacacttttacagtgagtataaactataaagtaaagtgagaagatcaaccattaatattcttgattttacactctaaa 104  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  36190081 aacaggtttgacacttttatagcgagtataaactataaagtaaagtgagaagatcaactgttaatattcttgattttacactctaaa 36189995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 36190237 - 36190151
Alignment:
Q  18 aacaggtttgacacttttacagtgagtataaactataaagtaaagtgagaagatcaaccattaatattcttgattttacactctaaa 104  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||    
T  36190237 aacaggtttgacacttttatagtgagtataaactataaagtaaagtgagaagatcaactgttcatattcttgattttacactctaaa 36190151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 36211673 - 36211587
Alignment:
Q  18 aacaggtttgacacttttacagtgagtataaactataaagtaaagtgagaagatcaaccattaatattcttgattttacactctaaa 104  Q
    |||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||    
T  36211673 aacaggtttgacacttttattgtgagtataaactataaagtaaagttagaagatcaactgttaatattcttgattttacactctaaa 36211587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 388
Target Start/End: Complemental strand, 36197442 - 36197393
Alignment:
Q  339 aaaaaattgtgttgtaacttcttgtgccattatgtcgtttcagcggggat 388  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||    
T  36197442 aaaaaattgtgttgtaacttcttgtgccattatgtcgtttaagaggggat 36197393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University