View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11767_high_17 (Length: 291)
Name: NF11767_high_17
Description: NF11767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11767_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 7805034 - 7805314
Alignment:
| Q |
1 |
ctattatagtagatttcagacttttgcaaattaatcatttgacccaaagcgtcttcgtaaatggatataatatgtttcatcgcaagagctacactatcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7805034 |
ctattatagtagatttcagacttttgcaaattaatcatttgacccaaagcgtcttcgtaaatggatataatatgtttcatcgcaagagctacactatcag |
7805133 |
T |
|
| Q |
101 |
atgcttggaa-tagtaagagtcaatcatcaacaaaacgaagatgtgaaataattgaagcattcttgtatattttggctccatgaatatcacctctacttt |
199 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7805134 |
atgcttggaaatagtaagagtcaatcatcaacaaaatgaagatgtgaaataatcgaagcattcttgtatattttggctccatgaatatcacctatacttt |
7805233 |
T |
|
| Q |
200 |
atgcttttctaataagtgttgatgattccagtcaatttgatcgtagactttgctaatatcaagctttaaagccacatctct |
280 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7805234 |
atgcttttctaataagtgttgatgattccggtcaatttgatcgtagactatgctaatatcaagctttaaagccacatctct |
7805314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University