View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11767_high_22 (Length: 242)
Name: NF11767_high_22
Description: NF11767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11767_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 3580737 - 3580527
Alignment:
| Q |
19 |
taggaatcgaacacgagaaaactactgtctactccagggaagatgagaagagttcaaaacaagaaagtaaaaattacctcattctattnnnnnnnttgat |
118 |
Q |
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| T |
3580737 |
taggaatcgaacacgagaaaactactgtctactccagggaagatgagaagagttcaaaacaagaaagtaaatattacctcattctattagaaaaattgat |
3580638 |
T |
|
| Q |
119 |
atatcaaaaagtaacaaatcttattagaaaagcttctctttctgttcatcaaaagcacagcggtaaaccatgacagacaacaacttgttgaacattttca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3580637 |
atatcaaaaagtaacaaatcttattagaaaagcttctctttctgttcatcaaaagcacagcggtaaaccatgacagacaacaacttgttgaacattttct |
3580538 |
T |
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| Q |
219 |
tggtttggtct |
229 |
Q |
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||||||||||| |
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| T |
3580537 |
tggtttggtct |
3580527 |
T |
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