View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11767_high_6 (Length: 483)
Name: NF11767_high_6
Description: NF11767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11767_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 374 - 475
Target Start/End: Complemental strand, 25771693 - 25771592
Alignment:
| Q |
374 |
aattgagttttctattggaattgagaagacacatttatgtgattgaggccagtttacaatcttaaattcaagttttgcaatgcaaataccgtgttctctg |
473 |
Q |
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| T |
25771693 |
aattgagttttctattggaattgagaagacacattcatgtgattgaggccagtttacaatcttaaattcaagttttgcaatgcaaataccgtgttctctg |
25771594 |
T |
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| Q |
474 |
ct |
475 |
Q |
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| T |
25771593 |
ct |
25771592 |
T |
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Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 25771851 - 25771762
Alignment:
| Q |
24 |
aggacatttcctcatcaaccccccttctctcctccaccccactaaccacattaatgttttaggagtttctactccaggtgttatttcaat |
113 |
Q |
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| T |
25771851 |
aggacatttcctcttcaaccccccttctctgtcacaccccactaaccacattaatgttttaggagtttctactccaggtgttatttcaat |
25771762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 156 - 330
Target Start/End: Complemental strand, 25745236 - 25745062
Alignment:
| Q |
156 |
aaataaattaaagagacatcatgtttcatttataattttgtaatgctctttttatgtataatagagtgtgtttaaaatctgaggtcatatgtgcattaga |
255 |
Q |
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| T |
25745236 |
aaatagattaaggagacaccctgtctaatttataaatttgcaatgttctttttatgtataacagggtgagtttataatctgagtttatacatgaattaaa |
25745137 |
T |
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| Q |
256 |
ctaatcaaattcgggacgttagatcatatcatctgaaggtgatgttggcgaaacagagaaattacattttctaat |
330 |
Q |
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| T |
25745136 |
ctaatcaaattatagacattagatcatagcatctgaagatgatgtaggcgaaacagataaattagattttctaat |
25745062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 25731238 - 25731171
Alignment:
| Q |
149 |
aaaaataaaataaattaaagagacatcatgtttcatttataattttgtaatgctctttttatgtataa |
216 |
Q |
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| T |
25731238 |
aaaaataaaataaactaaagagacaccttatctaatttataattttataatgttctttttatgtataa |
25731171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 476
Target Start/End: Original strand, 45301953 - 45301996
Alignment:
| Q |
433 |
tcttaaattcaagttttgcaatgcaaataccgtgttctctgctt |
476 |
Q |
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| T |
45301953 |
tcttaaattcaagttttgcaatgcacataccttgtcctctgctt |
45301996 |
T |
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