View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11767_high_7 (Length: 480)
Name: NF11767_high_7
Description: NF11767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11767_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 3 - 478
Target Start/End: Complemental strand, 37340744 - 37340269
Alignment:
| Q |
3 |
ggttatacgtaaattctattgtaaatcctcaatgagattgatcttcctctaataatgtgtgaattttcattcaatgagattgatgtaccaagggatttaa |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37340744 |
ggttatacgtaaattctattgtaaatcctcaatgagattgatcttcctctaataatgtgtgaattttcattcaatgagattgatgtaccaagggatttaa |
37340645 |
T |
|
| Q |
103 |
acaagccacaaatcagaaaccaattcatctatcaaataggtaactatgtcaaactcaagttctaagccattttcaaaggcttcaatgtcaaagtcaagcc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37340644 |
acaagccacaaatcagaaaccaattcatctatcaaataggtaactatgtcaagctcaagttctaagccattttcaaaggcttcaatgtcaaagtcaagcc |
37340545 |
T |
|
| Q |
203 |
atctacccaatggagtgctcatgtccttgctaacaagctcatccaccatcacctcttcttccatgcttctaaattccaccatctccttgtacacttctgc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37340544 |
atctacccaatggagtgctcatgtccttgctaacaagctcatccaccatcacctcttcttccatgcttctaaattccaccatctccttgtacacttctgc |
37340445 |
T |
|
| Q |
303 |
taaccaacctttcctcttcactgatgccaccatgcatctaggccatgctttgcaccttgcaacaaaaacttgcctacatcttaattctatgcattcactt |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37340444 |
taaccaacctttcctcttcactgatgccaccatgcatctaggccatgctttgcaccttgtaacaaaaacttgcctacatcttaattctatgcattcactt |
37340345 |
T |
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| Q |
403 |
acacagtcaaatatagctttccttttgagcttagagtattcttcatagctttccacaccagttctctgcttctcca |
478 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
37340344 |
acacagtcaaatatagctttccttttgagcttagagtattcttcatagctttccacaccagttctttgattctcca |
37340269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 3475660 - 3475625
Alignment:
| Q |
3 |
ggttatacgtaaattctattgtaaatcctcaatgag |
38 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
3475660 |
ggttatacgtaaattctattataaatcctcaatgag |
3475625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 46059677 - 46059599
Alignment:
| Q |
182 |
cttcaatgtcaaagtcaagccatctacccaatggagtgctcatgtccttgctaacaagctcatccaccatcacctcttc |
260 |
Q |
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||||||| ||||||||||||||| | || || |||||||||||| |||| ||||||||||||||||| || ||||| |
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| T |
46059677 |
cttcaatctcaaagtcaagccatttcccatatccagtgctcatgtcattgcagacaagctcatccaccattacatcttc |
46059599 |
T |
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