View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11767_low_1 (Length: 749)

Name: NF11767_low_1
Description: NF11767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11767_low_1
NF11767_low_1
[»] chr4 (1 HSPs)
chr4 (13-735)||(24884535-24885257)


Alignment Details
Target: chr4 (Bit Score: 691; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 13 - 735
Target Start/End: Original strand, 24884535 - 24885257
Alignment:
Q  13 atggacatcaatctaaaactagtttacactgtcagtgcatatctttctttctctactcggagaaggattcatatgagtaaaatttgaaatattcataatc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24884535 atggacatcaatctaaaactagtttacactgtcagtgcatatctttctttctctactcggagaaggattcatatgagtaaaatttgaaatattcataatc 24884634  T
Q  113 ttatcgtcctatttcacagcacctttcacagtcagctacaaatttggtggtttaattactatacactgatcgtgtaaagttattttacacatgataacgt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24884635 ttatcgtcctatttcacagcacctttcacagtcagctacaaatttggtggtttaattactatacactgatggtgtaaagttattttacacatgataacgt 24884734  T
Q  213 tgtcatgtcaattaatgaatacgacaacagacaattgtgtattcgtattcagtaattgatctggcaatacattattgaattcaaagggaaaagaggagga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24884735 tgtcatgtcaattaatgaatacgacaacagacaattgtgtattcgtattcagtaattgatctggcaatacattattgaattcaaagggaaaagaggagga 24884834  T
Q  313 acctcacctttgaaacatcaaattcaagatcaacgagtcgattctcagagccaccaaaatctttacaccttccatcatcaaccttaaccaacctcgcttt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24884835 acctcacctttgaaacatcaaattcaagatcaacgagtcgattctcagagccaccaaaatctttacaccttccatcatcaaccttaaccaacctcgcttt 24884934  T
Q  413 ctccgaaaccttcacaacagaagaatccaaatccttcctaagcaaactcccacccataataatccccatatccaaagccctaagcgcctccttaaactct 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  24884935 ctccgaaaccttcacaacagaagaatccaaatccttcctaagcaaactcccacccataataatccccatatccaaagccctaagtgcttccttaaactct 24885034  T
Q  513 ccattttcatagcaacacttagcaacttgcaaacacgccatcgagtacgcgtcacgccacaccggcaacaccgagtgccacggaccagagtgcagctgct 612  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24885035 ccattttcatagcaacacttcgcaacttgcaaacaggccatcgagtacgcgtcacgccacaccggcaacaccgagtgccacggaccagagtgcagctgct 24885134  T
Q  613 cccacgccatctcgcgaactgcttctgcagcgcgaatgtcgccggcggcagcgagggaggacatacgtacgtaggcgtagcctccgtgggatgagatgga 712  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  24885135 cccacgccatctcgcgaactgcttctgctgcgcgaatgtcgccggcggcagcgagggaggacatacgaacgtaggcgtagcctccgtaggatgagatgga 24885234  T
Q  713 gtggaggagtgtgggagattctg 735  Q
    |||||||||||||||||||||||    
T  24885235 gtggaggagtgtgggagattctg 24885257  T

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