View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11767_low_16 (Length: 299)
Name: NF11767_low_16
Description: NF11767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11767_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 1991842 - 1991563
Alignment:
| Q |
1 |
agagagtatatgagttgaattaattagttagttagtttgttagagacgtgaagatggctagagaggaggacgaagagaacggtggcgtgccagttctacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1991842 |
agagagtatatgagttgaattaattagttagttagtttgttagagacgtgaagatggctagagaggaggacgaagagaacagtggcgtgccagttctacc |
1991743 |
T |
|
| Q |
101 |
tacgagttcgagttcgagtagcacaagacgagttgaacgaagagcagatccttttctcatagtttgtagatgcttcagtttgattacctctttagcttct |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1991742 |
tacgagttcgagttcaagtagcacaagacgagttgaacgaagagcagatccttttctcatagtttgtagatgcttcagtttgattacctctttagctgct |
1991643 |
T |
|
| Q |
201 |
attctctgcgtcgctgtcaacgttctctctgctgttcgctccttcaaaaatccaaatactgtatctatctatctttcttc |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1991642 |
attctctgcgtcgctgtcaacgttctctctgctgttcgctccttcaaaaatccaaatactgtatctatctatctttcttc |
1991563 |
T |
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