View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11767_low_2 (Length: 702)

Name: NF11767_low_2
Description: NF11767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11767_low_2
NF11767_low_2
[»] chr1 (1 HSPs)
chr1 (16-688)||(35611003-35611664)


Alignment Details
Target: chr1 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 16 - 688
Target Start/End: Original strand, 35611003 - 35611664
Alignment:
Q  16 tagtcattcttaaaagtcaataaagcactattagagtaactttccaaccaaatgtttccctaaacattcaaggttgtatattccatggcataagtataac 115  Q
    ||||||||||||||||||||||||||||          ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35611003 tagtcattcttaaaagtcaataaagcac----------actttccaaccaaatgtttccctaaccattcaaggttgtatattccatggcataagtataac 35611092  T
Q  116 ccaagacgtcagaattaaacatgaagttattgcctaagttgcaagaaaaaggcccaagaaaagctccctaaaaatacccccgcaagcagcattcaaacca 215  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35611093 ccaagacgtcagaattaaacacgaagttattgcctaagttgcaagaaaaagccccaagaaaagctccctaaaaatacccccgcaagcagcattcaaacca 35611192  T
Q  216 atcaccgagtcgtccgtattggccctaaaccaagggggaaaaggcgggttccaaacaacaatcaaaataagtctaactcgtcgacgatggagaaagacag 315  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||||| |||||||||||||||| ||||  |||||||||||||||||||||| | |||     
T  35611193 atcaccgagtcgtccgtattggccttaaaccaagggg-aaatggcggtttccaaacaacaatcacaatatctctaactcgtcgacgatggagagacacat 35611291  T
Q  316 aaatagtcgaggaaactaacctctgaagctaagcaacaaccagaagaagtattaccactcatagtaaccgaataatgaatctttaccttggtcgcatgaa 415  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||    
T  35611292 aaatagtcgaggaaactaacctctgaagctaggcaacaaccagaagaagtattaccactcatcgtaaccgaataatcaatctttaccttggccgcatgaa 35611391  T
Q  416 tacttgctttgatattcttgaaacataagttgttacgggacatccaaatagcatgttaagtatgaacaattgctacgacaaacatatatgtaatctgcga 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  35611392 tacttgctttgatattcttgaaacataagttgttacgggacatccaaatagcatgtaaagtatgaacaattgctacgacaaacatatctgtaatctgcga 35611491  T
Q  516 agatcagcgaggcaggagccaagccacaaccacaactctgtagcaaactgggaccggaagaaaagatggtgagaactctcttccacagacatacaaaggg 615  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  35611492 agatcagtgaggcaggagccaagccacaaccacaactctgtagcaaactgggaccggaagaaaagatggtgagaactctcttccgcggacatacaaaggg 35611591  T
Q  616 aacaaacgtaaactatcaagcatccacgacttcgaaggttctcagccgtgggcatcttttgatgcataagaat 688  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35611592 aacaaacataaactatcaagcatccacgacttcgaaggttctcagccgtgggcatcttttgatgcataagaat 35611664  T

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