View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11767_low_20 (Length: 250)
Name: NF11767_low_20
Description: NF11767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11767_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 32286470 - 32286236
Alignment:
| Q |
1 |
agtgcttgaggaggaaaaggaacaggaagtggaagaagagaaggaatctgttgaggttgttgaacatgtaaaggagattgtggttgttcagaaacctgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32286470 |
agtgcttgaggaggaaaaggaacaggaagtggaagaagagaaggaatctgttgaggttgttgaacatgtaaaggagattgtggttgttgagaaacctgct |
32286371 |
T |
|
| Q |
101 |
gctacggttgaaaagaggaccgttttgcgaacaggttctgaaggagaagaggttcaaaagttgcaggttcgatttattccgaatatacactactttcatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32286370 |
gctacggttgaaaagaggaccgttttgcgaacaggttctgaaggagaagaggttcaaaagttgcaggttcgatttattccgaatatacactactttcatg |
32286271 |
T |
|
| Q |
201 |
aattgatatgttgtggtttgcgttgatgttgctgt |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
32286270 |
aattgatatgttgtggtttgcgttgatgttgctgt |
32286236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University