View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11767_low_24 (Length: 233)

Name: NF11767_low_24

Description: NF11767

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11767_low_24

[»] chr4 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 175; E-Value: 2e-94

Query Start/End: Original strand, 17 - 207

Target Start/End: Complemental strand, 56020076 - 56019886

Alignment:

Q	17	agagaacgtccaaccattggtgaaattgttgatgcactaaaatacttatcttccaagagtacctctaaagtctataaacatggggtgcgtagctaaccgt	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	56020076	agagaacgtccaaccattggtgaaattgttgatgcactaaaatacttatcttccaagagtacctctaaagtctataaacatgggttgcgcagctaaccgt	56019977	T

Q	117	tgcaaccacatttcaaaccagacagaagttaatttacataggtataagattctaggttgtttttcatttatgttcatgctttagatttttg	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	56019976	tgcaaccacatttcaaaccagacagaagttaatatacttaggtataagattctaggttgtttttcatttatgttcatgctttagatttttg	56019886	T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 39; E-Value: 0.0000000000003

Query Start/End: Original strand, 117 - 203

Target Start/End: Complemental strand, 6155705 - 6155619

Alignment:

Q	117	tgcaaccacatttcaaaccagacagaagttaatttacataggtataagattctaggttgtttttcatttatgttcatgctttagatt	203	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\| \|\| \|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\| \|\|\|\|
T	6155705	tgcaaccacatttcaaattagacatagattaaatttcataggcattagattctaggttgtttttcatttatgtccatgattttgatt	6155619	T

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