View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11767_low_3 (Length: 587)
Name: NF11767_low_3
Description: NF11767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11767_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 99 - 574
Target Start/End: Original strand, 2249625 - 2250122
Alignment:
| Q |
99 |
gcattcaattttgtgtctgttgttggaattcgttggagattattaaatgtagttgaagt------------caatgagtgtgagatagactttatatagt |
186 |
Q |
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| T |
2249625 |
gcattcaattttgtgtctgttgttggaattcgttggagattattaaatgtagttgaagttggttaggattacaatgagtgtgagatagactttatatagt |
2249724 |
T |
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| Q |
187 |
gtcccaaccgcatttagaatctccacggttgggattttctagcattcatggagacaggacattggtggtcgtttgatcaagatcatacgattcaaattca |
286 |
Q |
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| T |
2249725 |
gtcccaaccgcatttagaatctccacggttgggattttctagcattcatggagacaggacattggtggtcgtttgatcaagatcatacgattcaaattca |
2249824 |
T |
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| Q |
287 |
aactttatattttaaattgtaaaattaaagtcttgcatttgtttggaccgtttaatctagatcga--------actatcactgatgtcttgaatgtgaga |
378 |
Q |
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| T |
2249825 |
aactttatattttaaattgtaaaattaaagtcttgcttttgtttggaccgtttaatctagatcgaactatcacactatcactgatgtcttgaatgtgaga |
2249924 |
T |
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| Q |
379 |
tcccctggtggcagggaatccaaattcaatcctaactaagttttaactatctttaataatctcctactaattctaacatctttttatattcttcatagtt |
478 |
Q |
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| T |
2249925 |
tccccgggtggcagggaatccaaattcaatcctaacttagttttaactatctttaataatctcctactaattctaacatctttttttattcttcatagtt |
2250024 |
T |
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| Q |
479 |
ttcttattgaaggga--atatgaaatgttgttttggttttgatgtgcagggaaatccaattgattgggtgagtactcataggtatcaccaccagttct |
574 |
Q |
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| T |
2250025 |
ttcttattgaagggaatatatgaaatgttgttttgattttgatgtgcagggaaatccaattgattgggtgagtactcataggtatcaccaccagttct |
2250122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 2249528 - 2249596
Alignment:
| Q |
13 |
agttttaagcttcctaaatggcttgaatatttctttgcttattgtggagttcttgctcttcaggtagag |
81 |
Q |
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| T |
2249528 |
agttttaagcttcctaaatggcttgaatatttctttgcttattgtggagttcttgctcttcaggtagag |
2249596 |
T |
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