View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11767_low_4 (Length: 544)

Name: NF11767_low_4
Description: NF11767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11767_low_4
NF11767_low_4
[»] chr5 (7 HSPs)
chr5 (17-526)||(14773159-14773668)
chr5 (21-257)||(15014567-15014800)
chr5 (320-524)||(17880296-17880505)
chr5 (19-257)||(15047326-15047564)
chr5 (443-526)||(15015349-15015432)
chr5 (303-409)||(15015227-15015335)
chr5 (67-260)||(17879644-17879839)
[»] chr4 (3 HSPs)
chr4 (73-251)||(51365480-51365658)
chr4 (69-207)||(53868932-53869070)
chr4 (67-248)||(54158187-54158368)
[»] chr1 (1 HSPs)
chr1 (33-267)||(36877159-36877393)


Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 17 - 526
Target Start/End: Original strand, 14773159 - 14773668
Alignment:
Q  17 acatcaatatgcatgtacaattacgtatatgacaatgcagatagataaaataatgaaaaataccatagttgcctcttggatagccattgtaaatgaatct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14773159 acatcaatatgcatgtacaattacgtatatgacaatgcagatagataaaataatgaaaaataccatagttgcctcttggatagccattgtaaatgaatct 14773258  T
Q  117 tgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctccatgacgagcaatttttaacaagagttcaaatgatgccttccttg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14773259 tgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctccatgacgagcaatttttaacaagagttcagatgatgccttccttg 14773358  T
Q  217 aagactcatcagacctaaaattaatatttagtcagctgagctctatgcaaccaataattttggtcatctgagctctagacaccgagggagtaatttaaaa 316  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  14773359 aagtctcatcagacctaaaattaatatttagtcagctgagctctatgcaaccaataattttagtcagctgagctctagacaccgagggagtaatttaaaa 14773458  T
Q  317 taattaggttgaaaaatcaacccataatctgtgatcttcggcctattagttgttttaggaatcatccaaatgcacaattgagtttttctaaatgcttttg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14773459 taattaggttgaaaaatcaacccataatctgtgatcttcggcctattagttgttttaggaatcatccaaatgcacaattgagtttttctaaatgcttttg 14773558  T
Q  417 atatcaaatgttgaaaagttgcttaggagctaaaaatccacgaaaacgagttataatttttgattttatatacatcaaaggcaccaagtaataatttaat 516  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  14773559 atatcaaatgttgaaaagttgcttatgagctaaaaatccacgaaaacgagttataattttttattttatatacaacaaaggcaccaagtaataatttaat 14773658  T
Q  517 agggaaacct 526  Q
    ||||||||||    
T  14773659 agggaaacct 14773668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 15014567 - 15014800
Alignment:
Q  21 caatatgcatgtacaattacgtatatgacaatgcagatagataaaataatgaaaaataccatagttgcctcttggatagccattgtaaatgaatcttgat 120  Q
    |||||||||||| |||||| ||||||||  || || ||  ||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||    
T  15014567 caatatgcatgttcaattatgtatatgatcattcaaatgaataaaataatgaaaaataccatagttgtctcttgtatagccattgtaaatgaatcctgat 15014666  T
Q  121 catctttagctacaactataagacagggtacctgaaaaccagtgtcttctccatgacgagcaatttttaacaagagttcaaatgatgccttccttgaaga 220  Q
    |||| ||| || ||||| |||||||||| |||||||| || |||||||||||||||| |||||||||| ||||||||||| |||||| ||||| ||||||    
T  15014667 catcattaactgcaactgtaagacagggcacctgaaagccggtgtcttctccatgaccagcaatttttgacaagagttcagatgatgtcttccatgaaga 15014766  T
Q  221 ctcatcagacctaaaattaatatttagtcagctgagc 257  Q
       ||||||||||||||||||||||||||||||||||    
T  15014767 ---atcagacctaaaattaatatttagtcagctgagc 15014800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 320 - 524
Target Start/End: Original strand, 17880296 - 17880505
Alignment:
Q  320 ttaggttgaaaaatcaacccataatctgtgatcttcggcctattagttgttttaggaa--tcatccaaatgcacaattgagtttttctaaatgcttttga 417  Q
    |||| |||||||||||| | | ||| |||| ||| |  ||||| ||||||||||||||  ||||||||||||| |||   ||||||||||||||||||||    
T  17880296 ttagtttgaaaaatcaaactagaatttgtggtctacaacctataagttgttttaggaagttcatccaaatgcataatgatgtttttctaaatgcttttga 17880395  T
Q  418 tatcaaatgttgaaaagttgcttag---gagctaaaaatccacgaaaacgagttataatttttgattttatatacatcaaaggcaccaagtaataattta 514  Q
    | ||  ||||||||||||||||||    |||||||||||||||| |||| ||||||||||||| | |||||||||| |||||||||||||||||||||||    
T  17880396 tttcggatgttgaaaagttgcttattatgagctaaaaatccacggaaacaagttataattttttagtttatatacaccaaaggcaccaagtaataattta 17880495  T
Q  515 atagggaaac 524  Q
    |||| |||||    
T  17880496 atagtgaaac 17880505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 15047326 - 15047564
Alignment:
Q  19 atcaatatgcatgtacaattacgtatatgacaatgcagatagataaaataatgaaaaataccatagttgcctcttggatagccattgtaaatgaatcttg 118  Q
    ||||||||||||||| ||||| | ||||||  ||||| |   ||||   ||||||||||||  ||||| | ||||  ||| ||||||||||||||||||     
T  15047326 atcaatatgcatgtagaattatgaatatgaacatgcaaaggaataagtgaatgaaaaatactgtagtttcttcttctataaccattgtaaatgaatcttt 15047425  T
Q  119 atcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctccatgacgagcaatttttaacaagagttcaaatgatgccttccttgaa 218  Q
    ||||||||||||| | || |||||||| || |||||||| ||||| ||||| || || | | | |||||||||||||| ||| | |||||||||| ||||    
T  15047426 atcatctttagctgctaccataagacaaggcacctgaaagccagtatcttccccgtgtctaacgatttttaacaagagctcatacgatgccttccatgaa 15047525  T
Q  219 gactcatcagacctaaaattaatatttagtcagctgagc 257  Q
    ||||| |||||||| | || |||| |||||||| |||||    
T  15047526 gactcgtcagacctgagatgaataattagtcagttgagc 15047564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 443 - 526
Target Start/End: Original strand, 15015349 - 15015432
Alignment:
Q  443 gagctaaaaatccacgaaaacgagttataatttttgattttatatacatcaaaggcaccaagtaataatttaatagggaaacct 526  Q
    |||||||||||| | | |||| ||||||||||||| | ||||||| |||||||||||||| ||||||||||||||| |||||||    
T  15015349 gagctaaaaatctatggaaacaagttataattttttagtttatatgcatcaaaggcaccaggtaataatttaatagtgaaacct 15015432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 409
Target Start/End: Original strand, 15015227 - 15015335
Alignment:
Q  303 ggagtaatttaaaataattaggttgaaaaatcaacccataatctgtgatcttcggcctattagttgttttaggaa--tcatccaaatgcacaattgagtt 400  Q
    ||||||||||| |||  |||| |||||||||||||||| ||| ||   ||||| |||||| |||| |||||||||  |||||||||||||| |  |||||    
T  15015227 ggagtaatttacaattgttagtttgaaaaatcaacccaaaatttgcagtcttcagcctataagttattttaggaagttcatccaaatgcactacggagtt 15015326  T
Q  401 tttctaaat 409  Q
    |||||||||    
T  15015327 tttctaaat 15015335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 260
Target Start/End: Original strand, 17879644 - 17879839
Alignment:
Q  67 taatgaaaaataccatagttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtc 166  Q
    ||||||||||||||  ||| |  ||| | ||| |||||||||||||||| | ||||||||||||| | || |||||||| || | || ||| ||||| |     
T  17879644 taatgaaaaataccccagtcgtttctcgtatacccattgtaaatgaatccttatcatctttagctgccaccataagacaaggcatctcaaagccagtata 17879743  T
Q  167 ttctccatgacgagcaatttttaacaagagttcaaatgatgccttccttgaagactcatcagacc--taaaattaatatttagtcagctgagctct 260  Q
       ||||||   ||||||||||| |||||||||| |||  || | || |||||||||||||||||  ||| || ||||| ||||||||| ||||||    
T  17879744 agttccatgctcagcaatttttaccaagagttcatatgcagcatcccatgaagactcatcagacctataagatgaatatctagtcagctaagctct 17879839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 73 - 251
Target Start/End: Original strand, 51365480 - 51365658
Alignment:
Q  73 aaaataccatagttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctcc 172  Q
    |||||||| |||||| |||||| | |||||||| ||||||||  || |||||||||||| |||||||||| ||||| |||| ||| ||||| | ||||||    
T  51365480 aaaataccctagttgactcttgtacagccattggaaatgaatactggtcatctttagctgcaactataaggcagggcaccttaaagccagtatgttctcc 51365579  T
Q  173 atgacgagcaatttttaacaagagttcaaatgatgccttccttgaagactcatcagacctaaaattaatatttagtcag 251  Q
    |||||||||||||| ||  | ||||| | | |||||||||| ||| ||||||| ||||||||||| |||||||||||||    
T  51365580 atgacgagcaatttctacaaggagtttagacgatgccttccatgaggactcattagacctaaaatgaatatttagtcag 51365658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 69 - 207
Target Start/End: Complemental strand, 53869070 - 53868932
Alignment:
Q  69 atgaaaaataccatagttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtctt 168  Q
    |||||||||||| |||||  ||||||  ||||||||| ||||||||| || |||||||||||| |||||||||| || || |||| ||| ||| | ||||    
T  53869070 atgaaaaataccctagttaactcttgtgtagccattggaaatgaatcctgttcatctttagctgcaactataaggcaaggcacctcaaagccattatctt 53868971  T
Q  169 ctccatgacgagcaatttttaacaagagttcaaatgatg 207  Q
    |||| ||||||||||||| ||  | ||||||| ||||||    
T  53868970 ctccgtgacgagcaatttctacaaggagttcagatgatg 53868932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 248
Target Start/End: Original strand, 54158187 - 54158368
Alignment:
Q  67 taatgaaaaataccatagttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtc 166  Q
    ||||||||| |||| |||| | ||||||   |||||||||||||||| | || |||||||||||  |||||||||| || || |||| ||| ||||  ||    
T  54158187 taatgaaaattaccctagtagactcttgtgcagccattgtaaatgaaacctggtcatctttagcagcaactataaggcaaggcacctcaaagccagaatc 54158286  T
Q  167 ttctccatgacgagcaatttttaacaag-agttcaaatgatgccttccttgaagactcatcagacctaaaattaatatttagt 248  Q
    ||||||||||  |||||| | | ||||| |||| | |||||||| ||| ||| ||||||||||||||| ||| ||||||||||    
T  54158287 ttctccatgagcagcaatatct-acaagaagtttagatgatgccctccatgaggactcatcagacctacaataaatatttagt 54158368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 33 - 267
Target Start/End: Complemental strand, 36877393 - 36877159
Alignment:
Q  33 acaattacgtatatgacaatgcagatagataaaataatgaaaaataccatagttgcctcttggatagccattgtaaatgaatcttgatcatctttagcta 132  Q
    ||||||| ||||||||  ||||| ||  ||||  ||| |||||||||| |||||| |||||| ||||||| || ||||| |||  ||||||| ||||||     
T  36877393 acaattatgtatatgatcatgcaaattaataagttaacgaaaaataccctagttgactcttgtatagccaatgcaaatggatccagatcatccttagctg 36877294  T
Q  133 caactataagacagggtacctgaaaaccagtgtcttctccatgacgagcaatttttaacaagagttcaaatgatgccttccttgaagactcatcagacct 232  Q
    |||||||||||||||| |||| | | ||||| | ||||||||||| |||||| | || |||||| ||| ||||| |  ||| ||||||||||||||||||    
T  36877293 caactataagacagggcacctcatagccagtattttctccatgaccagcaatctgtaccaagagatcatatgatactctccatgaagactcatcagacct 36877194  T
Q  233 aaaattaatatttagtcagctgagctctatgcaac 267  Q
    ||||| ||| |||| |||||| |||| ||| ||||    
T  36877193 aaaataaatttttaatcagctaagctttatacaac 36877159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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