View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11767_low_8 (Length: 479)
Name: NF11767_low_8
Description: NF11767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11767_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 25771614 - 25771322
Alignment:
| Q |
1 |
atgcaaataccgtgttctctgctatactttctcaattttaactaaattcnnnnnnn-ctcttggacagaaatttgttgctgctctagatcattgaactcg |
99 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25771614 |
atgcaaataccgtgttctctgctcttctttctcaattttaactaaattctttttttgctcttggacagaaatttgttgctgctctagatcattgaactcg |
25771515 |
T |
|
| Q |
100 |
ttgctaatgtgttgatgcaagatggatgatcatttgttaagccgcctcaggttaccatcttcacaagtttatgcgactcacactgtcacccagttctcct |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25771514 |
ttgctaatgtgttgatgcaagatggatgatcatttgttaagccgcctcaggttaccatcttcacaagtttatgcgactcacactgtcacccaattctcct |
25771415 |
T |
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| Q |
200 |
cgaacagcaaagtgttaaactacggttccatgtgtttaagcaacctctaggatacctccactaaagatacacgaagctactatccacaatttt |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25771414 |
cgaacagcaaagtgttaaactacggttccatgtgtttaagcaacctctaggatacctccactaaagatacacgaagctactatccacaatttt |
25771322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 5542937 - 5542879
Alignment:
| Q |
212 |
tgttaaactacggttccatgtgttt-aagcaacctctaggatacctccactaaagatac |
269 |
Q |
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|||||||||||| || ||||||||| |||||||||||| |||| ||| ||||||||||| |
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| T |
5542937 |
tgttaaactacgatttcatgtgttttaagcaacctctaagataactcgactaaagatac |
5542879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 45302030 - 45302081
Alignment:
| Q |
57 |
ctcttggacagaaatttgttgctgctctagatcattgaactcgttgctaatg |
108 |
Q |
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|||| |||||||||||||||| || |||||||||| ||||||||||||||| |
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| T |
45302030 |
ctctcggacagaaatttgttgttgttctagatcatcaaactcgttgctaatg |
45302081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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