View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11767_low_9 (Length: 445)

Name: NF11767_low_9
Description: NF11767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11767_low_9
NF11767_low_9
[»] chr7 (5 HSPs)
chr7 (7-171)||(3191587-3191753)
chr7 (302-427)||(3191883-3192010)
chr7 (99-170)||(42012690-42012761)
chr7 (303-352)||(3196110-3196159)
chr7 (10-56)||(29152350-29152396)
[»] chr8 (3 HSPs)
chr8 (7-172)||(32166655-32166821)
chr8 (131-171)||(33897625-33897665)
chr8 (13-57)||(33897742-33897786)
[»] chr5 (5 HSPs)
chr5 (74-171)||(7113706-7113804)
chr5 (1-51)||(37077663-37077713)
chr5 (99-172)||(7215244-7215317)
chr5 (3-40)||(40483704-40483740)
chr5 (8-40)||(972851-972883)
[»] chr1 (3 HSPs)
chr1 (7-39)||(2534436-2534468)
chr1 (119-171)||(68153-68205)
chr1 (8-48)||(34601630-34601670)
[»] chr6 (2 HSPs)
chr6 (6-40)||(32047196-32047230)
chr6 (6-40)||(32342622-32342656)
[»] chr4 (1 HSPs)
chr4 (69-171)||(25234284-25234386)
[»] chr3 (3 HSPs)
chr3 (118-172)||(20519430-20519484)
chr3 (7-40)||(42091811-42091844)
chr3 (8-65)||(54437803-54437860)
[»] scaffold0564 (1 HSPs)
scaffold0564 (8-40)||(5456-5488)
[»] chr2 (1 HSPs)
chr2 (8-40)||(2248957-2248989)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 9e-71; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 7 - 171
Target Start/End: Original strand, 3191587 - 3191753
Alignment:
Q  7 gagatgaagaagtttgatgtttttgagatgaaaagaataactgatagtaaaagaaaatcat--gtgagtctacatttttcctccatgtattggcggtaat 104  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  3191587 gagatgaagaactttgatgtttttgagatgaaaagaataactgatagtaaaagaaaatcatatgtgagtctacatttttcctccatgtattggcggtaat 3191686  T
Q  105 ttacccttcatgtcaaatatgattcaattttggaacgaaaaggatgtaaatcacatcttaaatgaag 171  Q
    ||||||||||||||||||| |||||||||||| || |||| ||||||||||||||||||||||||||    
T  3191687 ttacccttcatgtcaaatacgattcaattttgaaatgaaagggatgtaaatcacatcttaaatgaag 3191753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 302 - 427
Target Start/End: Original strand, 3191883 - 3192010
Alignment:
Q  302 catttttatgagatcaccacatagatgctttctccaagattctcaaatcactacttgtaataaaaa-ttttaatagagaagtcttctatccaacgtaag- 399  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||     
T  3191883 catttttatgagatcatcacatagatgctttctccaagattctcaaatcactacttctaataaaaacttttaatagagaagtcttctatccaacgtaaga 3191982  T
Q  400 tattaccaaacttgcatgataggtttcc 427  Q
     |||||||||||||||||||||||||||    
T  3191983 aattaccaaacttgcatgataggtttcc 3192010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 42012761 - 42012690
Alignment:
Q  99 ggtaatttacccttcatgtcaaatatgattcaattttggaacgaaaaggatgtaaatcacatcttaaatgaa 170  Q
    ||||||||| || ||||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  42012761 ggtaatttatccctcatgacatatatgattcgattttggaacgaaaaagatgtaaatcacatcttaaatgaa 42012690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 3196110 - 3196159
Alignment:
Q  303 atttttatgagatcaccacatagatgctttctccaagattctcaaatcac 352  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3196110 atttttatgagatcagcacatagatgctttctccaagattctcaaatcac 3196159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 29152350 - 29152396
Alignment:
Q  10 atgaagaagtttgatgtttttgagatgaaaagaataactgatagtaa 56  Q
    |||||||||||||||||| |||||||||||| | |||||||| ||||    
T  29152350 atgaagaagtttgatgttattgagatgaaaatagtaactgattgtaa 29152396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 172
Target Start/End: Original strand, 32166655 - 32166821
Alignment:
Q  7 gagatgaagaagtttgatgtttttgagatgaaaagaataactgatagtaaaagaaaatcatg-tgagtctacatttttcctccatgtattggcggtaatt 105  Q
    ||||||||||||||||||||| ||||||||||||  |||| ||||||||| | ||| |   | ||||  |||||||||| |  ||| |||||  ||||||    
T  32166655 gagatgaagaagtttgatgttcttgagatgaaaatgataattgatagtaagaaaaactatcgatgagcatacatttttctttgatgaattgggtgtaatt 32166754  T
Q  106 tacccttcatgtcaaatatgattcaattttggaacgaaaaggatgtaaatcacatcttaaatgaaga 172  Q
    ||||  | ||| ||| || ||||| ||||||||||||||  |||||||||||||| |||||||||||    
T  32166755 tacctctaatgacaagtacgattcgattttggaacgaaagagatgtaaatcacatgttaaatgaaga 32166821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 33897665 - 33897625
Alignment:
Q  131 attttggaacgaaaaggatgtaaatcacatcttaaatgaag 171  Q
    ||||| ||||||||| |||||||||||||| ||||||||||    
T  33897665 attttagaacgaaaaagatgtaaatcacatgttaaatgaag 33897625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 33897786 - 33897742
Alignment:
Q  13 aagaagtttgatgtttttgagatgaaaagaataactgatagtaaa 57  Q
    ||||| |||||||||||||||||||||| | ||| ||||||||||    
T  33897786 aagaattttgatgtttttgagatgaaaatagtaattgatagtaaa 33897742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 7113706 - 7113804
Alignment:
Q  74 ctacatttttcctccatgtattg-gcggtaatttacccttcatgtcaaatatgattcaattttggaacgaaaaggatgtaaatcacatcttaaatgaag 171  Q
    |||||||||||||  ||| |||| | |||||||||||  | |||||||||| ||||||||| |||||| |||  |||||||||||||||||||||||||    
T  7113706 ctacatttttccttgatgaattgaggggtaatttaccgctgatgtcaaatacgattcaattatggaacaaaagagatgtaaatcacatcttaaatgaag 7113804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37077713 - 37077663
Alignment:
Q  1 tcgagtgagatgaagaagtttgatgtttttgagatgaaaagaataactgat 51  Q
    |||| |||||||||||||||| ||||| ||||||||||||  |||||||||    
T  37077713 tcgaatgagatgaagaagtttaatgttcttgagatgaaaatgataactgat 37077663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 7215244 - 7215317
Alignment:
Q  99 ggtaatttacccttcatgtcaaatatgattcaattttggaacgaaaaggatgtaaatcacatcttaaatgaaga 172  Q
    ||||||||||| || |||  ||||||||||||||||| ||| ||||| |||| | ||||||| || ||||||||    
T  7215244 ggtaatttaccgttaatgataaatatgattcaattttagaatgaaaaagatggagatcacatattcaatgaaga 7215317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 40483740 - 40483704
Alignment:
Q  3 gagtgagatgaagaagtttgatgtttttgagatgaaaa 40  Q
    |||||||||||||||||||||||||||| |||||||||    
T  40483740 gagtgagatgaagaagtttgatgttttt-agatgaaaa 40483704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 972883 - 972851
Alignment:
Q  8 agatgaagaagtttgatgtttttgagatgaaaa 40  Q
    |||||||||||||||||||| ||||||||||||    
T  972883 agatgaagaagtttgatgttcttgagatgaaaa 972851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 2534436 - 2534468
Alignment:
Q  7 gagatgaagaagtttgatgtttttgagatgaaa 39  Q
    |||||||||||||||||||||||||||||||||    
T  2534436 gagatgaagaagtttgatgtttttgagatgaaa 2534468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 68205 - 68153
Alignment:
Q  119 aaatatgattcaattttggaacgaaaaggatgtaaatcacatcttaaatgaag 171  Q
    |||||| |||| ||||||||||||||| |||| | ||||||| ||||||||||    
T  68205 aaatatcattcgattttggaacgaaaaagatggagatcacatgttaaatgaag 68153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 34601630 - 34601670
Alignment:
Q  8 agatgaagaagtttgatgtttttgagatgaaaagaataact 48  Q
    ||||||| | ||||||||||||||||||||||| |||||||    
T  34601630 agatgaaaacgtttgatgtttttgagatgaaaataataact 34601670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 32047230 - 32047196
Alignment:
Q  6 tgagatgaagaagtttgatgtttttgagatgaaaa 40  Q
    |||||||||||||||||||||| ||||||||||||    
T  32047230 tgagatgaagaagtttgatgttcttgagatgaaaa 32047196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 32342656 - 32342622
Alignment:
Q  6 tgagatgaagaagtttgatgtttttgagatgaaaa 40  Q
    ||||||||| |||||||||||||||||||||||||    
T  32342656 tgagatgaaaaagtttgatgtttttgagatgaaaa 32342622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 25234284 - 25234386
Alignment:
Q  69 tgagtctacatttttcctccatgtattggcggtaatttacccttcatgtcaaatatgattcaattttggaacgaaaaggatgtaaatcacatcttaaatg 168  Q
    |||| |||||||||||||  ||| |||   |||||||||||  ||||| |||||| ||||| ||||||||||| ||  | | ||||||||| ||||||||    
T  25234284 tgagcctacatttttccttgatgaattacgggtaatttaccgctcatgacaaatacgattcgattttggaacgtaagaggtataaatcacaccttaaatg 25234383  T
Q  169 aag 171  Q
    |||    
T  25234384 aag 25234386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 20519430 - 20519484
Alignment:
Q  118 caaatatgattcaattttggaacgaaaaggatgtaaatcacatcttaaatgaaga 172  Q
    |||||||||||||||||||||||||||| |||| | ||||||  || ||||||||    
T  20519430 caaatatgattcaattttggaacgaaaaagatggatatcacacgttgaatgaaga 20519484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 42091811 - 42091844
Alignment:
Q  7 gagatgaagaagtttgatgtttttgagatgaaaa 40  Q
    |||||||| |||||||||||||||||||||||||    
T  42091811 gagatgaaaaagtttgatgtttttgagatgaaaa 42091844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 54437860 - 54437803
Alignment:
Q  8 agatgaagaagtttgatgtttttgagatgaaaagaataactgatagtaaaagaaaatc 65  Q
    |||||||||||||||||||||||||||| ||||   |||||||| |||| | ||||||    
T  54437860 agatgaagaagtttgatgtttttgagattaaaatggtaactgattgtaagaaaaaatc 54437803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 5456 - 5488
Alignment:
Q  8 agatgaagaagtttgatgtttttgagatgaaaa 40  Q
    ||||||||||||||||| |||||||||||||||    
T  5456 agatgaagaagtttgatctttttgagatgaaaa 5488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 2248957 - 2248989
Alignment:
Q  8 agatgaagaagtttgatgtttttgagatgaaaa 40  Q
    |||||||||||||| ||||||||||||||||||    
T  2248957 agatgaagaagtttaatgtttttgagatgaaaa 2248989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University