View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_high_14 (Length: 538)
Name: NF11768_high_14
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 21 - 527
Target Start/End: Original strand, 31062883 - 31063383
Alignment:
| Q |
21 |
gactatatttctaacttgctctccaagattctaaaattccctcatctttaaatactcaactattcagtactgcaaggatcaaaagattgcactcaaacat |
120 |
Q |
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| T |
31062883 |
gactatatttctaacttgctctccaagattctaaaattccctcatctttaaatactcaactattcagtactgcaaggatcaaaagattgcactcaaacat |
31062982 |
T |
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| Q |
121 |
aatctacattctcaaaactactcatcagaataaaatctcttgaaaagcataaagtatatacttatcactcacattatatccttggatctaattttagcaa |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31062983 |
aatctacattctcaaaactactcatcagaataaaatctcttgaaaagcataaagtatatacttatca------ttatatccttggatctaattttagcaa |
31063076 |
T |
|
| Q |
221 |
gccatacattaggtaatatacaacaaatgtaaacttggcgaaacaatgtaagacacttgattcagcagaaaaatataaatgcgagatcaaaccattgtag |
320 |
Q |
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| T |
31063077 |
gccatacattaggtaatatacaacaaatgtaaacttggcgaaacaatgtaagacacttgattcagcaaaaaaatataaatgcgagatcaaaccattgtag |
31063176 |
T |
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| Q |
321 |
ctctcatcatgccattatctctaccccatcatcactcttaccggcatcaatttcattacctatcctctgaacactcttataagtatacctctttgctaag |
420 |
Q |
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| T |
31063177 |
ctctcatcatgccatcatgtctaccccatcatcactcttaccggcatcaatttcattacctatcctctgaacactcttataagtatacctctttgctaag |
31063276 |
T |
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| Q |
421 |
aagagataagcacacaaattcaaagcattgataattgccaacatccaataaaacctatccaaacgacttgaatttatatccttcccaatccaacttttac |
520 |
Q |
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| T |
31063277 |
aagagataagcacacaaattcaaagcattgataattgccaacatccaataaaacctatccaaacgacttgaatttatatccttcccaatccaacttttac |
31063376 |
T |
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| Q |
521 |
cattctt |
527 |
Q |
| |
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||||||| |
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| T |
31063377 |
cattctt |
31063383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 319 - 527
Target Start/End: Original strand, 31074588 - 31074793
Alignment:
| Q |
319 |
agctctcatcatgccattatctctaccccatcatcactcttaccggcatcaatttcattacctatcctctgaacactcttataagtatacctctttgcta |
418 |
Q |
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| T |
31074588 |
agctctcatcatgccatcatctctacc---tcatcactcttacaaccatcagtttcattacctatcttctgaacactcttataagtatacctctttgcta |
31074684 |
T |
|
| Q |
419 |
agaagagataagcacacaaattcaaagcattgataattgccaacatccaataaaacctatccaaacgacttgaatttatatccttcccaatccaactttt |
518 |
Q |
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| T |
31074685 |
agaagagataagcacacaaattcaaagcattaataattgccaacatccaataaaacctatccaaacgacttgaatttatatccttcccaatccaactttt |
31074784 |
T |
|
| Q |
519 |
accattctt |
527 |
Q |
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||||||||| |
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| T |
31074785 |
accattctt |
31074793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 395 - 527
Target Start/End: Original strand, 31057169 - 31057301
Alignment:
| Q |
395 |
tcttataagtatacctctttgctaagaagagataagcacacaaattcaaagcattgataattgccaacatccaataaaacctatccaaacgacttgaatt |
494 |
Q |
| |
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||||||||||||||||||||| || || |||| | | |||| |||||||| | | ||| |||||||||||||||||| ||||||||||||| ||||| |
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| T |
31057169 |
tcttataagtatacctctttgatatgacgagaaacacgcacacattcaaagaactaatagctgccaacatccaataaaagttatccaaacgactcgaatt |
31057268 |
T |
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| Q |
495 |
tatatccttcccaatccaacttttaccattctt |
527 |
Q |
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|||||||||||||||||||||||| ||| |||| |
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| T |
31057269 |
tatatccttcccaatccaacttttgccactctt |
31057301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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