View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_high_15 (Length: 529)
Name: NF11768_high_15
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Complemental strand, 38919244 - 38918727
Alignment:
| Q |
1 |
cactaaactataacattttctcaaattattatctgtatcggtgtgttcgtgtcatgtccgatgggtatatgtgtgtatgtgcgtcagtattatatatgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38919244 |
cactaaactataacattttctcaaattattatctgtatcggtgtgttcgtgtcatgtccgatgggtatatgtgtgtatgtgcgtcagtattatatatgaa |
38919145 |
T |
|
| Q |
101 |
acaaatttatcttttgtcataatgtatgacatgttcataagatgtttttactcctataattataacttgaatgtaactaattagtataactaacatttat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38919144 |
acaaatttatcttttgtcataatgtatgacatgttcataagatgtttttactcctataattataacttgaatgtaactaattagtataactaacatttat |
38919045 |
T |
|
| Q |
201 |
gtctaatatcaggagcaatcaacgacctctccgaccaacagaaagttcaactcattctctaccatgttacaccaaaatactactctctttccgatttctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38919044 |
gtctaatatcaggagcaatcaacgacctctccgaccaacagaaagttcaactcattctctaccatgttacaccaaaatactactctctttccgatttctt |
38918945 |
T |
|
| Q |
301 |
aacagtttctaacccagttagaacacaagcttctggtaaagaaggtaactggggtcttcacttcacttcacaaggtaaccaagtcaatgtttcaactgga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38918944 |
aacagtttctaacccagttagaacacaagcttctggtaaagaaggtaactggggtcttcacttcacttcacaaggtaaccaagtcaatgtttcaactgga |
38918845 |
T |
|
| Q |
401 |
gttgttactgtacctatcaacaatgctttgagacaacaatttcctttggctgtttatcaattggacaaggttttgttaccttctgaactttttggtgcta |
500 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38918844 |
gttgttactgtacctatcaacaatgcattgagacaacaatttcctttggctgtttatcaattggacaaggttttgttaccttctgaactttttggtgcta |
38918745 |
T |
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| Q |
501 |
agtctccatcttcatctc |
518 |
Q |
| |
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|||||||||||||||||| |
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| T |
38918744 |
agtctccatcttcatctc |
38918727 |
T |
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