View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_high_17 (Length: 514)
Name: NF11768_high_17
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 504
Target Start/End: Original strand, 3645062 - 3645546
Alignment:
| Q |
18 |
acagacatccaaaattttgatgtcatgtactgtataatttgggttttatgtctgtttttggtgtaaccgtagaagataaaaaagtaaacagagaaataaa |
117 |
Q |
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| T |
3645062 |
acagacatccaaagttttgatgtcatgtactgtataatttgggttttatgtctgtttttggtgtaaccgtagaagataaaaaagtaaacagagaaataaa |
3645161 |
T |
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| Q |
118 |
catatatagtgtcacatacagcgtcagtgttctgatgttcaaataagacaattgttatgttaatcatcacatatgcttagattcttgtcatttacaatat |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3645162 |
catatatagtgtcacatacagcgtcagtgatctgatgttcaaataacacaattgttatgttaatcatcacatatgcttagattcttgtcgtttacaatat |
3645261 |
T |
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| Q |
218 |
aaatagtgagatatggacaaaattttaagatnnnnnnnntgtagttatatatgtgtctttagttgtttgaaatcgcttaaaataataccttcgtgctatg |
317 |
Q |
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| T |
3645262 |
aaatagtgagatatggacaaaattttaagataaaaaaaatgtagt--tatatgtgtctttagttgtttgaaatcgcttaaaataataccttcgtgctatg |
3645359 |
T |
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| Q |
318 |
aatttggctttattgaagtaaaacccttcannnnnnnattggcaggttttgaaattgtggttggtgacacaaaatctgtcttttattattgctggtgcca |
417 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3645360 |
aatttggctttattgaagtaaaacccttcatttttttattggcaggttttgaaattgtggttggtgacacaaaatctgtcttttattattgctggtgcca |
3645459 |
T |
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| Q |
418 |
ctgttgttaccttacttgtctactcatctttgaagtttacaaatttcccagttttcttattacttgtagtcataatcaatatctgtg |
504 |
Q |
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| T |
3645460 |
ctgttgttaccttactagtctactcatctttgaagtttacaaatttcccagttttcttattacttgtagtcataatcaatatctgtg |
3645546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 355 - 504
Target Start/End: Original strand, 3636145 - 3636294
Alignment:
| Q |
355 |
attggcaggttttgaaattgtggttggtgacacaaaatctgtcttttattattgctggtgccactgttgttaccttacttgtctactcatctttgaagtt |
454 |
Q |
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|||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3636145 |
attggcaggtattgcaattgtggctggtgacacaaaatctgtcttttattattgctggtgccactgtagttaccttacttgtctactcatctttgaagtt |
3636244 |
T |
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| Q |
455 |
tacaaatttcccagttttcttattacttgtagtcataatcaatatctgtg |
504 |
Q |
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|||||||||| ||||||||||||||||||| || |||||||||||||||| |
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| T |
3636245 |
tacaaatttcacagttttcttattacttgtggtgataatcaatatctgtg |
3636294 |
T |
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