View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_high_18 (Length: 501)
Name: NF11768_high_18
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 16 - 491
Target Start/End: Complemental strand, 12647760 - 12647285
Alignment:
| Q |
16 |
aaaaatacacgagcaaagcaataatccaattatgttagccatccagacagacgtttaaagcacaaatatcagcgatctcccttcatttaattggcatcaa |
115 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647760 |
aaaaatacatgagcaaagcaataatccaattatgttagccatccagacagacgtttaaagcacaaatatcagcgatctcccttcatttaattggcatcaa |
12647661 |
T |
|
| Q |
116 |
gtaacagaatttcgaacaaatcgcaaaatagaaaataggctacataacagaaagttggaaactaataagcacaataattgctgcaacattagtaaataaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647660 |
gtaacagaatttcgaacaaatcgcaaaatagaaaataggctacataacagaaagttggaaactaataagcacaataattgctgcaacattagtaaataaa |
12647561 |
T |
|
| Q |
216 |
atagagattgaagcatagaaaaattacaaatgagtttatttctcccatacttgataatattcaataaagtatgagcaattgataagccaaattatatata |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12647560 |
atagagattgaagcatagaaaaattacaaatgagtttatttctcccatacttgataatattcaataaagaatgagcaattgataagccaaattatatata |
12647461 |
T |
|
| Q |
316 |
aataacttaatagcattcctcttcatcaaaatcataaatctaattattcattactccgaaagaaagaaggtttttcttataagttataatttgcaacctt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647460 |
aataacttaatagcattcctcttcatcaaaatcataaatctaattattcattactccgaaagaaagaaggtttttcttataagttataatttgcaacctt |
12647361 |
T |
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| Q |
416 |
cgtggctcttcattaacccaaatttcctcaatcctttgggtacttaaatcaaaacatgctaactccgcatcttctt |
491 |
Q |
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| T |
12647360 |
tgtggctcttcattaacccaaatttcctcaatcctttgggtacttaaatcaaaacatgctaactccgtatcttctt |
12647285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 89 - 221
Target Start/End: Complemental strand, 12652969 - 12652838
Alignment:
| Q |
89 |
gatctcccttcatttaattggcatcaagtaacagaatttcgaacaaatcgcaaaatagaaaataggctacataacagaaagttggaaactaataagcaca |
188 |
Q |
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||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| |
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| T |
12652969 |
gatctcccttcatttaaatggcatcaagtcacataatttcgaacaaatcgcaaaatagaaaataggctacatgacag-aagtcagaaactaataagcaca |
12652871 |
T |
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| Q |
189 |
ataattgctgcaacattagtaaataaaatagag |
221 |
Q |
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| T |
12652870 |
ataattgctgcaacattagtaaataaaatagag |
12652838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 361 - 479
Target Start/End: Complemental strand, 12652529 - 12652411
Alignment:
| Q |
361 |
attcattactccgaaagaaagaaggtttttcttataagttataatttgcaaccttcgtggctcttcattaacccaaatttcctcaatcctttgggtactt |
460 |
Q |
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||||||| |||| |||||||||||||||| ||| ||| |||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||| |
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| T |
12652529 |
attcattcctccaaaagaaagaaggttttccttgtaacttataatttgcaaccttcgtggctctccattaacacaaacttcctcaatcctttgggtactt |
12652430 |
T |
|
| Q |
461 |
aaatcaaaacatgctaact |
479 |
Q |
| |
|
||||||||||||||||||| |
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| T |
12652429 |
aaatcaaaacatgctaact |
12652411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 12652764 - 12652702
Alignment:
| Q |
218 |
agagattgaagcatagaaaaattacaaatgagtttatttctcccatacttgataatattcaat |
280 |
Q |
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| T |
12652764 |
agagattgaagcatagaaaaattacaaatgtgtttatttctccaatacttgatattattcaat |
12652702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 491
Target Start/End: Complemental strand, 12725164 - 12725029
Alignment:
| Q |
359 |
ttattcattactccgaaagaaagaaggtttttcttataagttataatttgcaacct---tcgtggctcttcattaacccaaatttcctcaatcctttggg |
455 |
Q |
| |
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||||||||| || | ||||||||||| |||| ||||||||||| || ||||||| | ||| |||| | ||||||| |||||||||||||||||||| |
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| T |
12725164 |
ttattcattcctacaaaagaaagaagattttccttataagttacgatctgcaaccaagctggtgactctgctttaaccccaatttcctcaatcctttggg |
12725065 |
T |
|
| Q |
456 |
tacttaaatcaaaacatgctaactccgcatcttctt |
491 |
Q |
| |
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|||||||||||| || ||||||||| ||||||||| |
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| T |
12725064 |
tacttaaatcaatccaggctaactcctcatcttctt |
12725029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 12652629 - 12652587
Alignment:
| Q |
317 |
ataacttaatagcattcctcttcatcaaaatcataaatctaat |
359 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
12652629 |
ataacttaataacattcctcttcgtcaaaatcataaatctaat |
12652587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 410
Target Start/End: Original strand, 12709697 - 12709752
Alignment:
| Q |
356 |
taattattcattactccgaaa-gaaagaaggtttttcttataagttataatttgca |
410 |
Q |
| |
|
||||||||||||||||| ||| |||||||| |||| ||||||||||||||| |||| |
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| T |
12709697 |
taattattcattactccaaaaagaaagaagattttgcttataagttataatctgca |
12709752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 35011543 - 35011583
Alignment:
| Q |
357 |
aattattcattactccgaaagaaagaaggtttttcttataa |
397 |
Q |
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||||||||||| |||||||||||||||| |||| ||||||| |
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| T |
35011543 |
aattattcattcctccgaaagaaagaagattttccttataa |
35011583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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