View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11768_high_2 (Length: 714)
Name: NF11768_high_2
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 185 - 663
Target Start/End: Original strand, 7323162 - 7323640
Alignment:
| Q |
185 |
ggcaaagatgaattgtacctaaagcttaagtaatataccaacagttgtacattaaggcaaggtaaaactaaagataaaagtaaaaaactagcaattcata |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7323162 |
ggcaaagatgaattgtacctaaagcttaagtaatataccaacagttctacattaaggcaaggtaaaactaaagataaaagtaaaaaactagcaattcata |
7323261 |
T |
|
| Q |
285 |
gattaatcggcatattaggccatgagattgtgaaggtaggatcccgtcccacagtcaatccactcagctagaaagtcgtcattccggtcttgatcagcca |
384 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7323262 |
gattaaacggcatattaggccatgagattgtgaaggtaggatcccgtcccgcagtcaatccactcagctagaaagtcgtcattccggtcttgatcagcca |
7323361 |
T |
|
| Q |
385 |
gctcagtttgaattaggttatcattccggtcttgatcgatcgacttagtttgaaagtcataactatgaaccttgtcgatccactcggcttgaaagctatc |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7323362 |
gctcagtttgaattaggttatcattccggtcttgatcgatcgacttagtttgaaagtcataactatgaaccttgtcgatccactcggcttgaaagctatc |
7323461 |
T |
|
| Q |
485 |
actccactttgattttgtcctcccacgttttgtttcatcagccgatcttttcaaatgaatcctatatttctgtcaaatgacattgcgatcaaaattttaa |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7323462 |
actccactttgattttgtcctcccacgttttgtttcatcagccgatcttttcaaatgaatcctatatttctgtcaaatgacattgcaatcaaaattttaa |
7323561 |
T |
|
| Q |
585 |
caataatactccacaagtttcaatttcaaatcacacaaaacacatgtagtatattattaataattcaaatagactcctt |
663 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7323562 |
caataatactccacaagtttcaatttcaaatcacacaaaacacatgtagtatattattaataattcaaatagactcctt |
7323640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 7322988 - 7323098
Alignment:
| Q |
11 |
caaaggacatgttaaaagaaggaagtgctttcccagaacagttttggtaagaatcactgtaatatctttatgaaatcagtaaaacagccagctatagacc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7322988 |
caaaggacatgttaaaagaaggaagtgctttcccggaacagttttggtaagaatcactgtaatatctttatgaaatcagtaaaacagccagctatagacc |
7323087 |
T |
|
| Q |
111 |
ttaaaggaatg |
121 |
Q |
| |
|
||||||||||| |
|
|
| T |
7323088 |
ttaaaggaatg |
7323098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 462 - 697
Target Start/End: Complemental strand, 7244875 - 7244648
Alignment:
| Q |
462 |
atccactcggcttgaaagctatcactccactttgattttgtcctcccacgttttgtttcatcagccgatcttttcaaatgaatcctatatttctgtcaaa |
561 |
Q |
| |
|
||||| || |||||| |||||||||||||||||| |||| || ||||| |||||||||||||||| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
7244875 |
atccattcagcttgagagctatcactccactttgtttttttcttcccaggttttgtttcatcagctgatctcttcaaatgaatcctatatttctg-caaa |
7244777 |
T |
|
| Q |
562 |
tgacattgcgatcaaaattttaacaataatactccacaagtttcaatttcaaatcacacaaaacacatgtagtatattattaataattcaaatagactcc |
661 |
Q |
| |
|
|||||||| |||| ||||||| ||||| | |||||||||||| |||||| ||||| ||||| |||||||||||||||||| || |||| || |
|
|
| T |
7244776 |
cgacattgcaatcacaattttatcaatagt-------aagtttcaatttaaaatcaatcaaaatacatgcagtatattattaataatttaattagaatct |
7244684 |
T |
|
| Q |
662 |
ttccaaaaacaaacctgtaaatgactagcaacatgt |
697 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7244683 |
ttcggaaaacaaacctgtaaatgactagcaacatgt |
7244648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 231 - 380
Target Start/End: Complemental strand, 7245024 - 7244876
Alignment:
| Q |
231 |
gtacattaaggcaaggtaaaactaaagataaaagtaaaaaactagcaattcatagattaatcggcatattaggccatgagattgtgaaggtaggatcccg |
330 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||| ||||| | ||||| |||||| | ||||||| |||||||||||||||||||||| |
|
|
| T |
7245024 |
gtacattaaggcaaggtaaaactaatcataaaaataaaaaactaagaattctttaattaaacggcatct-aggccataagattgtgaaggtaggatcccg |
7244926 |
T |
|
| Q |
331 |
tcccacagtcaatccactcagctagaaagtcgtcattccggtcttgatca |
380 |
Q |
| |
|
||||||||||||||| | |||||||||||| || ||||| | ||||||| |
|
|
| T |
7244925 |
ccccacagtcaatccatttagctagaaagtcatcgttccgattttgatca |
7244876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 646 - 697
Target Start/End: Original strand, 7323663 - 7323714
Alignment:
| Q |
646 |
aattcaaatagactccttccaaaaacaaacctgtaaatgactagcaacatgt |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7323663 |
aattcaaatagactccttccaaaaacaaacctgtaaatgactagcaacatgt |
7323714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 581 - 641
Target Start/End: Complemental strand, 8163347 - 8163287
Alignment:
| Q |
581 |
ttaacaataatactccacaagtttcaatttcaaatcacacaaaacacatgtagtatattat |
641 |
Q |
| |
|
|||| |||||||||||| || ||||| ||| |||||||||||||| || |||||||||||| |
|
|
| T |
8163347 |
ttaataataatactccataaatttcagtttaaaatcacacaaaacgcaagtagtatattat |
8163287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 6e-36; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 490 - 691
Target Start/End: Complemental strand, 31772105 - 31771905
Alignment:
| Q |
490 |
actttgattttgtcctcccacgttttgtttcatcagccgatcttttcaaatgaatcctatatttctgtcaaatgacattgcgatcaaaattttaacaata |
589 |
Q |
| |
|
||||||||||| |||||||| ||| | ||||||||| | |||| |||||| || |||||| || ||||||| |||||||| |||| ||||||||||||| |
|
|
| T |
31772105 |
actttgattttttcctcccatgttatatttcatcagtcaatctcttcaaacgagtcctatgcttttgtcaaacgacattgcaatcacaattttaacaata |
31772006 |
T |
|
| Q |
590 |
atactccacaagtttcaatttcaaatcacacaaaacacatgtagtatattattaataattcaaatagactccttccaaaaacaaacctgtaaatgactag |
689 |
Q |
| |
|
||| | || | |||| ||||| |||| |||||||||||||||| |||||||||||||||| || ||||||||||| |||| | ||||| |||||||| || |
|
|
| T |
31772005 |
atatttcata-gttttaatttaaaataacacaaaacacatgtaatatattattaataatttaattagactccttctaaaatctaacctataaatgacaag |
31771907 |
T |
|
| Q |
690 |
ca |
691 |
Q |
| |
|
|| |
|
|
| T |
31771906 |
ca |
31771905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 615 - 689
Target Start/End: Complemental strand, 31776613 - 31776539
Alignment:
| Q |
615 |
tcacacaaaacacatgtagtatattattaataattcaaatagactccttccaaaaacaaacctgtaaatgactag |
689 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| || |||||| |||||||||||||| |||||||||||| |
|
|
| T |
31776613 |
tcacacaaaagacatgtagtatattattaataatttaatcagactcattccaaaaacaaacacgtaaatgactag |
31776539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 320 - 361
Target Start/End: Complemental strand, 31772292 - 31772251
Alignment:
| Q |
320 |
gtaggatcccgtcccacagtcaatccactcagctagaaagtc |
361 |
Q |
| |
|
|||||||| |||||| |||||||| ||||||||||||||||| |
|
|
| T |
31772292 |
gtaggatctcgtccctcagtcaattcactcagctagaaagtc |
31772251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University