View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_high_20 (Length: 486)
Name: NF11768_high_20
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 24 - 468
Target Start/End: Complemental strand, 6414977 - 6414532
Alignment:
| Q |
24 |
gacaagacattgatactatcgcgtcgacgctggaaataattcgnnnnnnnnnngaaagtaattgaatgtcatcacatctgtcagtatcagatattgacac |
123 |
Q |
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| T |
6414977 |
gacaagacattgatactatcgcgtcgacgctggaaataattcgaaaaaaaaa-gaaagtaattgaatgtcatcacatctgtcagtgtcagatattgacac |
6414879 |
T |
|
| Q |
124 |
atctaggacaacaaacacatcgtcaatctgatgtattggtgctagtgtgctacatagaacaaaagtaacattatctcaaataattaaactaatggactac |
223 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6414878 |
atctaggacaacaaacacatcgtcaatctgatgt-ttggtgctagtgtgctacatagaacaaaagtaacattagctcaaataattaaactaatggactac |
6414780 |
T |
|
| Q |
224 |
tttcttacactttattcataacaacgataaggataaagaaaacacaaaaatatacttcacaaaattggtcatt---atgtcttgatgttttctcaataaa |
320 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6414779 |
tttcttacactttattcataacaaagataaggataaagaaaacacaaaaatatacttcacaaaattggtcattcttatgtcttgatgttttctcaataaa |
6414680 |
T |
|
| Q |
321 |
acctttgtcctgaatattttcccataaaaatcagctgtatattgttaaagtctttaatcctcttaagagaccccaaggtccacatagaattgagagcaat |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6414679 |
acctttgtcctgaatattttcccataaaaatcagctgtatattgttaaagtctttaatcctcttaagagaccccaaggtccacatagaattgagagtaat |
6414580 |
T |
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| Q |
421 |
gtttgaatttaagatggaactaataattgaaacgttgaaatcagaacc |
468 |
Q |
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| T |
6414579 |
gtttgaatttaagatggaactaataattgaaacgttgaaatcagaacc |
6414532 |
T |
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