View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_high_30 (Length: 418)
Name: NF11768_high_30
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_high_30 |
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| [»] scaffold1036 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 143 - 396
Target Start/End: Original strand, 17448579 - 17448832
Alignment:
| Q |
143 |
tagagttctcaagaaatttggatttaatgatacattctgcagttggattgaggccatcctttattctgctactatctcaattaacatcaatggcaaccaa |
242 |
Q |
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| T |
17448579 |
tagagttctcaagaaatttggatttaatgatacattctgcagttggattgaggccatcctttattctgctactatctcaattaacatcaatggcaaccaa |
17448678 |
T |
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| Q |
243 |
caaggctactttaaatgcaacatgaggggtgaggcaaggtgaccctttgtctcctctcttattatgcatagcagaatatgttcttagtaggtttgtccaa |
342 |
Q |
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| T |
17448679 |
caaggctactttaaatgcaacatgaggggtgaggcaaggtgaccctttgtctcctctcttattctgcatagcagaatatgttcttagtaggtttgtccaa |
17448778 |
T |
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| Q |
343 |
acttgtagagcaaggcaacctggatcagatggctggaacaagaaacactaaggt |
396 |
Q |
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| T |
17448779 |
acttgtagagcaaggcaacctggatcagatggctggaacaagaaacactaaggt |
17448832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 17448464 - 17448568
Alignment:
| Q |
1 |
taaagggtagaaatcttaagggttgtgtttgtttagcttcaaaagcagtcaatataatggataacatggcttatggtggtaatctagctttaaaagttta |
100 |
Q |
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| T |
17448464 |
taaagggtagaaatcttaagggttgtgtttgtttagcttcaaaagcagtcaatataatggataacagggcttatggtggtaatctagcattaaaagttta |
17448563 |
T |
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| Q |
101 |
catta |
105 |
Q |
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| T |
17448564 |
catta |
17448568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1036 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold1036
Description:
Target: scaffold1036; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 23 - 386
Target Start/End: Complemental strand, 2609 - 2245
Alignment:
| Q |
23 |
ttgtgtttgtttagcttcaaaagcagtcaatataatggataacatggcttatggtggtaatctagctttaaaagtttacattagcaaagcatttaatact |
122 |
Q |
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| T |
2609 |
ttgtgtctgtttagcatccgaagcaatcaatctgatggataagagagcttatggtgggaatctcgctttaaaagtggacatcaataaagcttttgacact |
2510 |
T |
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| Q |
123 |
ttggagtggagcttcttgcttagagttctcaagaaatttggatttaatgatacattctgcagttggattgaggccatcctttattctgctactatctcaa |
222 |
Q |
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| T |
2509 |
ttggagtggagctttttacttaaagttctcaggaaatttgggttcagtgaaaaattttgtgattggatcatagccattcttcactctgcaaccatctcaa |
2410 |
T |
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| Q |
223 |
ttaacatcaatggcaaccaacaaggctactttaaatgcaacatgaggggtgaggcaaggtgaccctttgtctcctctcttattatgcatagcagaatatg |
322 |
Q |
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| T |
2409 |
tcaatatcaatggcacacaacaaggatatttcaaatg-ttcaaggggggtcaggcagggagaccctccgtctcctcttcttttctgcatagcagaagatg |
2311 |
T |
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| Q |
323 |
ttcttagtag--gtttgtccaaacttgtagagcaaggcaacctggatcagatggctggaacaagaa |
386 |
Q |
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| T |
2310 |
ttcttagcaggagtttgagcaaacttgtggagcaaggcaagctggaacaaatgaatggaacaagaa |
2245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 383
Target Start/End: Original strand, 11413282 - 11413642
Alignment:
| Q |
24 |
tgtgtttgtttagcttcaaaagcagtcaatataatggataacatggcttatggtggtaatctagctttaaaagtttacattagcaaagcatttaatactt |
123 |
Q |
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| T |
11413282 |
tgtgtctgtttagcatctgaagtaatcaatttgatggataagagagcttatggtgggaatcttgctttaaaagtggacatcagtaaagcttttgacactt |
11413381 |
T |
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| Q |
124 |
tggagtggagcttcttgcttagagttctcaagaaatttggatttaatgatacattctgcagttggattgaggccatcctttattctgctactatctcaat |
223 |
Q |
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||||||| ||||| || || | |||||||| ||||||||| || | ||| | || || |||||| ||||| ||| | ||||| || |||||||| |
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| T |
11413382 |
tggagtgaagctttttactcaaagttctcaggaaatttgggttcagtgaaattttttgtgattggatcatagccattcttcactctgcaaccatctcaat |
11413481 |
T |
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| Q |
224 |
taacatcaatggcaaccaacaaggctactttaaatgcaacatgaggggtgaggcaaggtgaccctttgtctcctctcttattatgcatagcagaatatgt |
323 |
Q |
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| T |
11413482 |
caatatcaatggcacacaacaaggatatttcaaatg-ttcaaggggggtcaggcagggagaccctctgtcccctcttcttttctgcatagcagaagatgt |
11413580 |
T |
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| Q |
324 |
tcttagtag--gtttgtccaaacttgtagagcaaggcaacctggatcagatggctggaacaa |
383 |
Q |
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| T |
11413581 |
tcttagcaggagtttgagcaaacttgtggagcaaggcaagctggaacaaatgaatggaacaa |
11413642 |
T |
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