View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11768_high_31 (Length: 418)

Name: NF11768_high_31
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11768_high_31
NF11768_high_31
[»] chr4 (15 HSPs)
chr4 (296-418)||(36627590-36627712)
chr4 (19-418)||(36636322-36636718)
chr4 (114-418)||(35968717-35969021)
chr4 (112-416)||(18364604-18364908)
chr4 (112-416)||(36598017-36598321)
chr4 (171-414)||(36910013-36910256)
chr4 (112-309)||(36665397-36665594)
chr4 (32-309)||(36643120-36643400)
chr4 (171-414)||(36629780-36630014)
chr4 (166-310)||(55966534-55966678)
chr4 (193-418)||(36612748-36612973)
chr4 (288-418)||(20211256-20211386)
chr4 (319-417)||(36642979-36643077)
chr4 (31-197)||(38862855-38863018)
chr4 (335-418)||(38862657-38862742)
[»] chr1 (1 HSPs)
chr1 (116-364)||(42602316-42602564)
[»] chr6 (4 HSPs)
chr6 (164-371)||(10812471-10812678)
chr6 (166-304)||(33839786-33839924)
chr6 (164-311)||(10812022-10812169)
chr6 (170-230)||(33843840-33843900)
[»] chr3 (3 HSPs)
chr3 (171-241)||(25597368-25597438)
chr3 (28-89)||(25597234-25597295)
chr3 (29-61)||(25602031-25602063)
[»] chr2 (1 HSPs)
chr2 (191-242)||(38989588-38989639)
[»] chr5 (2 HSPs)
chr5 (116-242)||(19657894-19658020)
chr5 (193-242)||(19674733-19674782)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 296 - 418
Target Start/End: Complemental strand, 36627712 - 36627590
Alignment:
Q  296 gccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcata 395  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36627712 gccaatttagctatgcgtggtatttcatcaaactttttcaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtataccttttcata 36627613  T
Q  396 aaatatgtgggagcggtctttct 418  Q
    |||||||||||||||||||||||    
T  36627612 aaatatgtgggagcggtctttct 36627590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 36636718 - 36636322
Alignment:
Q  19 cattatgcgttgtgtttcttcatgtcaagctcttacatctcttagactttcaatttcccctagaggtggtattggtagtagtaattctagaatattattt 118  Q
    ||||||| | || |||||||||||||  |||||||| ||||| |  |||||||||| ||||| || ||||||| ||||||   ||||| |||||||||||    
T  36636718 cattatgagctgcgtttcttcatgtcgggctcttacttctctgatgctttcaatttaccctaaagatggtatttgtagta---attctggaatattattt 36636622  T
Q  119 ccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccaccttta 218  Q
    ||||  ||||||||||| ||   ||| |||||||||||||| |||||||||| |||||| ||||||||||  ||||||| |||||||||||   |||||     
T  36636621 ccaaaatctttgaatttgccaacattaaccaacttatatctaacaaatttcaacttttgcggtggtgaaaatggttgtgctgagccctttttggcctttc 36636522  T
Q  219 ccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgcgtggtat 318  Q
    ||||||||| ||||||||||||| || |||||  | ||| |||||| ||||||||||  |||||| |||| || |||| ||||||    ||||||  |      
T  36636521 ccaagttgactagtttggtcattcgtagttgtagggtaagggatgcacaaatcctcaggatatcaagtgaaacccttgtcaattttaaaatgcgtaatta 36636422  T
Q  319 ttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcggtctttct 418  Q
    ||||  | ||||| | ||||| ||| ||| | |||||||||||||||||||||  ||||| ||||  ||| |||| |||||||||||||| |||||||||    
T  36636421 ttcagaagactttgcaaaaattgagttatgtgctccaagtctttgtacctttacttttactggtactcctgttcagaaaatatgtgggagtggtctttct 36636322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 114 - 418
Target Start/End: Original strand, 35968717 - 35969021
Alignment:
Q  114 tatttccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccac 213  Q
    |||||||||  | ||||||||| || | |||||||| |||  |||| ||||||||| ||||||| |||| | ||| ||| |||||||| ||||||||| |    
T  35968717 tatttccaaaatatttgaatttgccagcattgaccagcttggatctaacaaatttcgccttttggggtgataaaaacggctgtgttgaccccttttccgc 35968816  T
Q  214 ctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgcgt 313  Q
    |||||| |||||||||||||||||| ||   |||||| || || ||||||||||||||||||| |||||| |||||||||||| | |||||||||||| |    
T  35968817 ctttactaagttgaatagtttggtcctttacggttgtaagatagaggatgctcaaatcctcaagatatcaagtgagacacttgtcgatttagctatgcat 35968916  T
Q  314 ggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcggtc 413  Q
      || |||||| || |||||| |||| ||| | | |||||| |||||||| |||||||   |||||||||  |||  ||| |||||||||||||||||||    
T  35968917 cataattcatctaatttttcccaaattgagttgtctactcctagtctttgcacctttactattaccggtattcctaatcagaaaatatgtgggagcggtc 35969016  T
Q  414 tttct 418  Q
    |||||    
T  35969017 tttct 35969021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 112 - 416
Target Start/End: Original strand, 18364604 - 18364908
Alignment:
Q  112 attatttccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttcc 211  Q
    |||||||||||  ||||||||||| ||   ||||||||||||| ||||  || ||||  ||||||| |||||||||| |||||||| |||||||||||||    
T  18364604 attatttccaaaatctttgaatttgcctttattgaccaacttagatctatcacatttttccttttgcggtggtgaaaacggttgtgctgagcccttttcc 18364703  T
Q  212 acctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgc 311  Q
     ||||| ||||||||||||||||||| |||  ||||||| || |||| ||||||||||| |||| ||||||| |||||||||||| |||||| || ||||    
T  18364704 gcctttcccaagttgaatagtttggttatttctggttgtaaggtaaaagatgctcaaattctcagcatatcaagtgagacacttgtcaattttgcgatgc 18364803  T
Q  312 gtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcgg 411  Q
     |  |  ||| ||||   || ||||||||||| ||| |  ||| ||||||||||||||||  ||| ||||||  | | |||| ||||||||||||||| |    
T  18364804 attattgttcttcaagaattgccaaaatcgagttatctgttcctagtctttgtacctttactttttccggtatgcttgttcagaaaatatgtgggagcag 18364903  T
Q  412 tcttt 416  Q
    |||||    
T  18364904 tcttt 18364908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 112 - 416
Target Start/End: Complemental strand, 36598321 - 36598017
Alignment:
Q  112 attatttccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttcc 211  Q
    |||||||||||  ||||||||||| ||   ||||||||||||| ||||  || ||||  ||||||| |||||||||| |||||||| |||||||||||||    
T  36598321 attatttccaaaatctttgaatttgcctttattgaccaacttagatctatcacatttttccttttgcggtggtgaaaacggttgtgctgagcccttttcc 36598222  T
Q  212 acctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgc 311  Q
     ||||| ||||||||||||||||||| |||  ||||||| || |||| ||||||||||| |||| ||||||| |||||||||||| |||||| || ||||    
T  36598221 gcctttcccaagttgaatagtttggttatttctggttgtaaggtaaaagatgctcaaattctcagcatatcaagtgagacacttgtcaattttgcgatgc 36598122  T
Q  312 gtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcgg 411  Q
     |  |  ||| ||||   || ||||||||||| ||| |  ||| ||||||||||||||||  ||| ||||||  | | |||| ||||||||||||||| |    
T  36598121 attattgttcttcaagaattgccaaaatcgagttatctgttcctagtctttgtacctttactttttccggtatgcttgttcagaaaatatgtgggagcag 36598022  T
Q  412 tcttt 416  Q
    |||||    
T  36598021 tcttt 36598017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 171 - 414
Target Start/End: Original strand, 36910013 - 36910256
Alignment:
Q  171 ccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaat 270  Q
    ||||||| ||| |||||| |||||||| ||||||||||| | ||||||||||||||||||||||||||||| || | |||||| ||||||||||||||||    
T  36910013 ccttttgcggtagtgaaaacggttgtgctgagccctttttcgcctttaccaagttgaatagtttggtcattagtagctgtgaggtaaaggatgctcaaat 36910112  T
Q  271 cctcaacatatcatgtgagacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtaccttt 370  Q
    ||||||||||||| |||||||||||| |||||||||  |||  | || || |    |||||  |||| || || ||| | ||||||||||||||||||||    
T  36910113 cctcaacatatcaagtgagacacttgtcaatttagccctgcacgataatttacttgactttgtcaaattcaagttatctgctccaagtctttgtaccttt 36910212  T
Q  371 aagtttaccggtagacctt-ttcataaaatatgtgggagcggtct 414  Q
    |  ||||||||| |||||| |||| ||||||| ||||||| ||||    
T  36910213 acttttaccggt-gaccttcttcagaaaatatatgggagcagtct 36910256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 112 - 309
Target Start/End: Complemental strand, 36665594 - 36665397
Alignment:
Q  112 attatttccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttcc 211  Q
    |||||||||||  || |||||||| ||   |||||||| |||| || | ||||||||| |||| || |||||||||| |||||||| |||||||||||||    
T  36665594 attatttccaaattcgttgaatttgcctttattgaccagcttagatataacaaatttcgccttctgcggtggtgaaagcggttgtgctgagcccttttcc 36665495  T
Q  212 acctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctat 309  Q
      |||||||| |||||||||||||| | || || ||||| || ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  36665494 gtctttaccatgttgaatagtttggcccttagtagttgtaaggtaaaggatgctcaaatcctcaccatatcaagtgatacacttgccaatttagctat 36665397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 32 - 309
Target Start/End: Complemental strand, 36643400 - 36643120
Alignment:
Q  32 gtttcttcatgtcaagctcttacatctcttagactttcaatttcccctagaggtggt-attggtagtagtaattct--agaat-attatttccaatgtct 127  Q
    ||||||||||| || ||||||||||||||||  |||||| || |||||||||||||| |||  || |  || ||||  ||||  |||||||||||  |||    
T  36643400 gtttcttcatgccacgctcttacatctcttaagctttcacttccccctagaggtggtcattattattt-tacttctgaagaaacattatttccaaaatct 36643302  T
Q  128 ttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttga 227  Q
    |||||||| ||    |||||||||||| || |  |||||||   |||||| |||||||||| |||||||| ||| |||||||   ||||| | |||||||    
T  36643301 ttgaatttgcctttgttgaccaacttagatttagcaaatttagtcttttgcggtggtgaaagcggttgtgctgatccctttttggcctttccaaagttga 36643202  T
Q  228 atagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctat 309  Q
    ||||||||| |||| || ||||| || ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  36643201 atagtttgggcattcgttgttgtaagataaaggatgctcaaatcctcaacatatcaagtgagacacttgtcaatttagctat 36643120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 171 - 414
Target Start/End: Original strand, 36629780 - 36630014
Alignment:
Q  171 ccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaat 270  Q
    ||||||| || ||||||| |||||||| |||||||||||| |||||||| ||||||||||||||| || || || |||||||| ||||||||||||||||    
T  36629780 ccttttgcggcggtgaaaacggttgtgctgagcccttttcgacctttacaaagttgaatagtttgatccttcgtagttgtgaggtaaaggatgctcaaat 36629879  T
Q  271 cctcaacatatcatgtgagacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtaccttt 370  Q
    ||||| ||||||| ||||||| |||| ||| |||||  ||| || |         |||||| ||||||| ||||||| |  ||||||||||||||||||     
T  36629880 cctcagcatatcaagtgagacccttgtcaagttagcattgcttgat---------aactttgccaaaattgagctatctgttccaagtctttgtaccttc 36629970  T
Q  371 aagtttaccggtagacctt-ttcataaaatatgtgggagcggtct 414  Q
    |  ||||||||| |||||| |||| ||||| ||||||||| ||||    
T  36629971 acttttaccggt-gaccttattcagaaaatttgtgggagcagtct 36630014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 166 - 310
Target Start/End: Complemental strand, 55966678 - 55966534
Alignment:
Q  166 tttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgct 265  Q
    ||||| ||| || |||| ||||| |||||||| |||||||||||    |||||||||||||| ||||||||||||| ||| ||||||| ||| ||||||     
T  55966678 tttcatcttctgcggtgatgaaaacggttgtgctgagccctttttgggctttaccaagttgagtagtttggtcattcgtgtttgtgaggtaagggatgca 55966579  T
Q  266 caaatcctcaacatatcatgtgagacacttgccaatttagctatg 310  Q
    ||||| ||||  |||||| || ||||||| | |||||||| ||||    
T  55966578 caaattctcaggatatcaagttagacactaggcaatttagatatg 55966534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 193 - 418
Target Start/End: Complemental strand, 36612973 - 36612748
Alignment:
Q  193 ttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagaca 292  Q
    ||||||||| |||| |||| |||||||||||||||||||||||||||||| | | ||||   | | |||||| |||| |||||  |||||| | ||||||    
T  36612973 ttgtgttgaaccctcttccgcctttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccctcaggatatcaagcgagaca 36612874  T
Q  293 cttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttc 392  Q
    || |  ||||||||||||| ||  | |||||   |||||  ||||||  || |||||||||  ||||||||||||||||  | |||||||   |||  ||    
T  36612873 ctagtaaatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactcagagtctttgtacctttacttataccggtcatcctgatc 36612774  T
Q  393 ataaaatatgtgggagcggtctttct 418  Q
    | | |||||||||||| |||||||||    
T  36612773 agagaatatgtgggagtggtctttct 36612748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 418
Target Start/End: Complemental strand, 20211386 - 20211256
Alignment:
Q  288 agacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagacc 387  Q
    ||||||||| || ||||||||||| |  |  ||||||  ||||| ||||||| ||| ||| |  ||| ||||||||||||||||  ||||||||||  ||    
T  20211386 agacacttgtcattttagctatgcataatgattcatccgactttgccaaaattgagttatctggtccgagtctttgtacctttacttttaccggtattcc 20211287  T
Q  388 ttttcataaaatatgtgggagcggtctttct 418  Q
    |  ||| ||||||||||| ||||||||||||    
T  20211286 tgatcagaaaatatgtggaagcggtctttct 20211256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 417
Target Start/End: Complemental strand, 36643077 - 36642979
Alignment:
Q  319 ttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcggtctttc 417  Q
    |||||| || ||| ||||||| ||||||| |||||||||||||||||| ||||  ||||  ||||| | | |||| |||||||| |||||||| |||||    
T  36643077 ttcatccaaatttgccaaaatagagctatctactccaagtctttgtacatttacttttattggtagtcttattcaaaaaatatgcgggagcggactttc 36642979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 197
Target Start/End: Complemental strand, 38863018 - 38862855
Alignment:
Q  31 tgtttcttcatgtcaagctcttacatctcttagactttcaatttcccctagaggtggtattggtagtagtaattctagaatattatttccaatgtctttg 130  Q
    ||||||||| ||||| ||||||||||||||||   ||||||||| |||||||   || | || |  |||| || || ||| |||||||||||  ||||||    
T  38863018 tgtttcttcttgtcacgctcttacatctcttatgttttcaatttaccctaga---ggcaatgttgatagtgatgctcgaacattatttccaaaatctttg 38862922  T
Q  131 aatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtg 197  Q
    ||||| || | ||| || | ||||  | | |||||||||  ||||||||||||||||| ||||||||    
T  38862921 aatttgcccgcattaactagcttaggtgtaacaaatttcgtcttttgtggtggtgaaaacggttgtg 38862855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 418
Target Start/End: Complemental strand, 38862742 - 38862657
Alignment:
Q  335 aaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaata--tgtgggagcggtctttct 418  Q
    ||||| ||||||| |||||||||||| ||||||||||  |||| |||||| |||  ||||| ||||  |||||||| |||||||||    
T  38862742 aaaattgagctatctactccaagtctatgtacctttacttttagcggtagtcctaatcatataatatgtgtgggagtggtctttct 38862657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 116 - 364
Target Start/End: Complemental strand, 42602564 - 42602316
Alignment:
Q  116 tttccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccacct 215  Q
    |||||||  ||||||||||| |||| |||||||| |||  |||||||||||||  ||||||| |||| |||||  ||| ||| ||| |||||||  ||||    
T  42602564 tttccaaaatctttgaatttgccggcattgaccagcttggatctcacaaattttgccttttgcggtgatgaaaatggtcgtgctgaaccctttttgacct 42602465  T
Q  216 ttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgcgtgg 315  Q
    |||||| ||||||||||||||||||| |  |||||  | |||| ||||| ||||||||||  |||||| |||||||||||| |||||||||||||| |      
T  42602464 ttaccaggttgaatagtttggtcattagcagttgtacggtaaaagatgcacaaatcctcaggatatcaagtgagacacttgtcaatttagctatgcataa 42602365  T
Q  316 tatttcatcaaacttttccaaaatcgagctatttactccaagtctttgt 364  Q
    |||||||||   |||| ||||||||||| ||| | ||||||| ||||||    
T  42602364 tatttcatcttcctttaccaaaatcgagttatctgctccaagcctttgt 42602316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 164 - 371
Target Start/End: Original strand, 10812471 - 10812678
Alignment:
Q  164 aatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatg 263  Q
    |||||||||||||  |||||||||| ||  | |||||||||||| ||  |||||||||| ||||| |||||| |||||  ||||||| || ||| |||      
T  10812471 aatttcaccttttacggtggtgaaaacgactatgttgagcccttctcggcctttaccaaattgaagagtttgatcattcatggttgtaagataatggaca 10812570  T
Q  264 ctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttg 363  Q
    | |||||| ||||||||||| ||||||||||||  ||||| ||||||  |  || |||||| ||  || ||||||| |||||||  |||||||  |||||    
T  10812571 cacaaatcatcaacatatcaagtgagacacttgtaaattttgctatggattatagttcatctaaaattgccaaaattgagctatccactccaaacctttg 10812670  T
Q  364 taccttta 371  Q
    ||| ||||    
T  10812671 tacgttta 10812678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 166 - 304
Target Start/End: Complemental strand, 33839924 - 33839786
Alignment:
Q  166 tttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgct 265  Q
    ||||||||| || |||| ||||| | |||||| ||||||||||||  ||||||||||||||||||| ||| ||||| || |||||  | | ||||||||     
T  33839924 tttcaccttctgcggtgatgaaaaccgttgtgctgagcccttttcagcctttaccaagttgaatagcttgatcattagtcgttgtatggttaaggatgca 33839825  T
Q  266 caaatcctcaacatatcatgtgagacacttgccaattta 304  Q
    |||||||||   |||||| |||||||||| | |||||||    
T  33839824 caaatcctccggatatcaagtgagacactagacaattta 33839786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 311
Target Start/End: Complemental strand, 10812169 - 10812022
Alignment:
Q  164 aatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatg 263  Q
    ||||| |||||||  |||||||||| ||| | ||  |||||||| ||  |||||||||| ||||| |||||| ||||| |||||||| || ||| |||      
T  10812169 aatttgaccttttacggtggtgaaaacggctatgcagagcccttctcggcctttaccaaattgaagagtttgatcattcgtggttgtaaggtaatggaca 10812070  T
Q  264 ctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgc 311  Q
    | |||||| ||||||||||| ||||||||||||  ||||| |||||||    
T  10812069 cacaaatcatcaacatatcaagtgagacacttgttaattttgctatgc 10812022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 33843900 - 33843840
Alignment:
Q  170 accttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaata 230  Q
    ||||| || |||| |||||  ||||||| ||||||||||||  ||||||||||||||||||    
T  33843900 accttctgcggtgatgaaaatggttgtgctgagcccttttctgcctttaccaagttgaata 33843840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 25597368 - 25597438
Alignment:
Q  171 ccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcatt 241  Q
    ||||||| |||| ||||| | |||||||||||||||||| | ||||||  | |||||||||||||||||||    
T  25597368 ccttttgcggtgatgaaagcagttgtgttgagccctttttcgcctttaaaatgttgaatagtttggtcatt 25597438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 25597234 - 25597295
Alignment:
Q  28 ttgtgtttcttcatgtcaagctcttacatctcttagactttcaatttcccctagaggtggta 89  Q
    |||||||||||||||||| ||||||||||||||||  |||||| ||| ||| | ||||||||    
T  25597234 ttgtgtttcttcatgtcacgctcttacatctcttacgctttcagtttacccaaaaggtggta 25597295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 25602031 - 25602063
Alignment:
Q  29 tgtgtttcttcatgtcaagctcttacatctctt 61  Q
    ||||||||||||||||| |||||||||||||||    
T  25602031 tgtgtttcttcatgtcacgctcttacatctctt 25602063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 38989588 - 38989639
Alignment:
Q  191 ggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattg 242  Q
    ||||||||||||||||||||||| ||||  | ||||||||||||| ||||||    
T  38989588 ggttgtgttgagcccttttccacatttaaaatgttgaatagtttgatcattg 38989639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 242
Target Start/End: Complemental strand, 19658020 - 19657894
Alignment:
Q  116 tttccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccacct 215  Q
    |||||||  ||||||||||| ||   ||||||||||||| |||| | | | || | |||| || | ||||||| |  ||||| |||||| |||| |  ||    
T  19658020 tttccaaaatctttgaatttgccatcattgaccaacttaaatctaaaagaatttatctttagttgcggtgaaaacaattgtgctgagccttttttcggct 19657921  T
Q  216 ttaccaagttgaatagtttggtcattg 242  Q
    |||||||||||||||||||||||||||    
T  19657920 ttaccaagttgaatagtttggtcattg 19657894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 19674782 - 19674733
Alignment:
Q  193 ttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattg 242  Q
    ||||| |||||| |||| |  |||||||||||||||||||||||||||||    
T  19674782 ttgtgctgagccttttttcggctttaccaagttgaatagtttggtcattg 19674733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University