View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_high_34 (Length: 402)
Name: NF11768_high_34
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 35 - 358
Target Start/End: Original strand, 7427502 - 7427822
Alignment:
| Q |
35 |
ctacatgtcaagacccaaacacaataagggattaaaccactactaattatgataatcgagagcaaagtagcattttttgttttcaaccaccaaaacgaaa |
134 |
Q |
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| T |
7427502 |
ctacatgtcaagacccaaacacataaagggattaaaccacta---attatgataatcaagagcaaagtagcactttttgttatcaaacaccaaaacgaaa |
7427598 |
T |
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| Q |
135 |
ggaacttaattttctctaacaattgttgcagttgttgttccttatgattaaatattatgttatttctttcttttcagattacccaaacgcatgcaaacca |
234 |
Q |
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| T |
7427599 |
ggagtttaattttctctaacaattgttgcggttgttgttccttaggattaaatattatgttatttctttcttttcagattacccaaacacatgcaaacca |
7427698 |
T |
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| Q |
235 |
aattaaccgtaaagaagaccgtacaaattttgagaatccacccgtctgactggattaagaaagtcatccgataaatgaaatgagtcaaccattaagatac |
334 |
Q |
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| T |
7427699 |
aattaattgtaaagaagaccgtacaaattttgagaatccacccgtctgaccggattaagaaagtcatccgataaatgaaatgagtcaaccattaagatac |
7427798 |
T |
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| Q |
335 |
caaataatgtcgaagtaattacaa |
358 |
Q |
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| T |
7427799 |
caaataatgtcgaagtaattacaa |
7427822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 7428332 - 7428368
Alignment:
| Q |
356 |
caaaaatatattgtcgtttcctggtcacttacctttg |
392 |
Q |
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| T |
7428332 |
caaaaacatattgtcgtttcctggtcacttacctttg |
7428368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 3394907 - 3394859
Alignment:
| Q |
193 |
gttatttctttcttttcagattacccaaacgcatgcaaaccaaattaac |
241 |
Q |
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| T |
3394907 |
gttatttctttcttttcaaattacccaaactaaagcaagccaaattaac |
3394859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 36024645 - 36024721
Alignment:
| Q |
79 |
aattatgataatcgagagcaaagtagcattttttgttttcaaccaccaaaacgaaaggaacttaattttctctaaca |
155 |
Q |
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| T |
36024645 |
aattatgataaccgaaagtaaattaacatgttttgccttcaaccaccaaaacgaaagaagctttattttatctaaca |
36024721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 33330474 - 33330425
Alignment:
| Q |
193 |
gttatttctttcttttcagattacccaaacgcatgcaaaccaaattaacc |
242 |
Q |
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| T |
33330474 |
gttatttctttctttccatattacccaaacacaagcaagccaaattaacc |
33330425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 21430912 - 21430957
Alignment:
| Q |
195 |
tatttctttcttttcagattacccaaacgcatgcaaaccaaattaa |
240 |
Q |
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| T |
21430912 |
tatttttttctttccaaattacccaaacacatgcaaaccaaattaa |
21430957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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