View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11768_high_36 (Length: 399)

Name: NF11768_high_36
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11768_high_36
NF11768_high_36
[»] chr2 (6 HSPs)
chr2 (1-208)||(13844129-13844336)
chr2 (240-399)||(13843939-13844097)
chr2 (324-399)||(5198800-5198875)
chr2 (307-399)||(30397055-30397145)
chr2 (34-111)||(13840688-13840765)
chr2 (346-399)||(28715881-28715934)
[»] chr6 (6 HSPs)
chr6 (324-399)||(27874135-27874210)
chr6 (324-399)||(27878854-27878929)
chr6 (324-399)||(26976276-26976351)
chr6 (324-399)||(1234798-1234873)
chr6 (343-399)||(30986624-30986680)
chr6 (343-399)||(30966768-30966824)
[»] chr4 (7 HSPs)
chr4 (324-399)||(42266000-42266075)
chr4 (324-399)||(42270719-42270794)
chr4 (324-399)||(24520170-24520245)
chr4 (324-399)||(30945621-30945696)
chr4 (324-399)||(30950327-30950402)
chr4 (324-399)||(48697277-48697352)
chr4 (324-399)||(48701966-48702041)
[»] chr5 (5 HSPs)
chr5 (324-399)||(34352345-34352420)
chr5 (324-399)||(34360053-34360128)
chr5 (324-399)||(29585445-29585520)
chr5 (324-399)||(41718507-41718582)
chr5 (324-399)||(41723233-41723308)
[»] chr3 (4 HSPs)
chr3 (324-399)||(5818658-5818733)
chr3 (324-399)||(5823420-5823495)
chr3 (324-399)||(54545981-54546056)
chr3 (343-399)||(2817407-2817463)
[»] chr8 (2 HSPs)
chr8 (324-399)||(9439517-9439592)
chr8 (324-399)||(9444237-9444312)
[»] chr1 (1 HSPs)
chr1 (358-399)||(30697259-30697300)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 13844336 - 13844129
Alignment:
Q  1 ttgatgatgttcctccgctggatcctttgaacgtgtaaagcaatttatgtgccaagtcaaacacgttggctcaatagtttctattggtaattgttgcaca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13844336 ttgatgatgttccttcgctggatcctttgaacgtgtaaagcaatttatgtgccaagtcaaacacgttggctcaatagtttctattggtaattgttgcaca 13844237  T
Q  101 aatttgaaattgcataaatgacattaatttttcttatgggacaataatcttttggtcctaaaaagaacaaccacgttgtatcatttcaatcatgtcacat 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13844236 aatttgaaattgcataaatgacattaattttttttatgggacaataatcttttggtcctaaaaataacaaccacgttgtatcatttcaatcatgtcacat 13844137  T
Q  201 aagtgaga 208  Q
    ||||||||    
T  13844136 aagtgaga 13844129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 240 - 399
Target Start/End: Complemental strand, 13844097 - 13843939
Alignment:
Q  240 gtgcatgtacttcttgagagtgagagaaacgatgccaagagaaaaatgatggtttattcaagtgaagtttctcctagtattaacattctcctatttttaa 339  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |  |||| ||||||||||||||||||||||||||||||||||    
T  13844097 gtgcatgtacttcttgagagtgagagaaacgatgccgagagaaaaatgatggtttatccg-gtgaggtttctcctagtattaacattctcctatttttaa 13843999  T
Q  340 aatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  13843998 aatagagtggtaattttattcttcttgtatttataaaggggtcctgtaatttcttccact 13843939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 5198875 - 5198800
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | ||||||||| || |||||| |||||| ||| | ||||||||||||||||||||||||    
T  5198875 attctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccact 5198800  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 399
Target Start/End: Complemental strand, 30397145 - 30397055
Alignment:
Q  307 tttctcctagtattaacattctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    ||||||||||| |||| ||||||||||||  || |||||| ||||||||  |||| ||||||| || ||||||||| ||||||||||||||||    
T  30397145 tttctcctagtgttaatattctcctatttc-aacatagag-ggtaatttgtctctccttgtatatagaaagaggtcttgtaatttcttccact 30397055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 13840765 - 13840688
Alignment:
Q  34 tgtaaagcaatttatgtgccaagtcaaacacgttggctcaatagtttctattggtaattgttgcacaaatttgaaatt 111  Q
    ||||||||||||| |||||||| ||||| | ||||| |||  |||| |  |||||||||| ||||||| |||||||||    
T  13840765 tgtaaagcaatttgtgtgccaactcaaataagttggatcagaagttccggttggtaattgctgcacaattttgaaatt 13840688  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 399
Target Start/End: Original strand, 28715881 - 28715934
Alignment:
Q  346 gtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    ||||||||| |||||| |||| ||||| | ||| ||||||||||||||||||||    
T  28715881 gtggtaattgtactctccttgcatttagagagatgtcctgtaatttcttccact 28715934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 27874210 - 27874135
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | |||||||||||| |||||| |||||||||| | ||||||||||||||||||||||||    
T  27874210 attctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 27874135  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 27878929 - 27878854
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | |||||||||||| |||||| |||||||||| | ||||||||||||||||||||||||    
T  27878929 attctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 27878854  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 26976351 - 26976276
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | |||||||||||| |||||| |||||| ||| | ||||||||||||||||||||||||    
T  26976351 attctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccact 26976276  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 1234798 - 1234873
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | ||||||||| || |||||| |||||| ||| | ||||||||||||||||||||||||    
T  1234798 attctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccact 1234873  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 399
Target Start/End: Original strand, 30986624 - 30986680
Alignment:
Q  343 agagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| |||||| |||| ||||| | |||||||||| |||||||||||||    
T  30986624 agagtggtaattgtactctccttgcatttagagagaggtcctgcaatttcttccact 30986680  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 399
Target Start/End: Original strand, 30966768 - 30966824
Alignment:
Q  343 agagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| |||||| |||| ||||| | |||||| ||| |||||||||||||    
T  30966768 agagtggtaattgtactctccttgcatttagagagaggttctgcaatttcttccact 30966824  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 42266000 - 42266075
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | |||||||||||| |||||| |||||||||| | ||||||||||||||||||||||||    
T  42266000 attctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 42266075  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 42270719 - 42270794
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | |||||||||||| |||||| |||||||||| | ||||||||||||||||||||||||    
T  42270719 attctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccact 42270794  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 24520245 - 24520170
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | |||||||||||| |||||| |||||| ||| | ||||||||||||||||||||||||    
T  24520245 attctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccact 24520170  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 30945696 - 30945621
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | |||||||||||| |||||| |||||||||| | |||||| |||||||||||||||||    
T  30945696 attctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggttctgtaatttcttccact 30945621  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 30950402 - 30950327
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | |||||||||||| |||| | |||||||||| | |||||| |||||||||||||||||    
T  30950402 attctcctatttataagagagagtggtaattgtactttccttgtatttagagagaggttctgtaatttcttccact 30950327  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 48697352 - 48697277
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | ||||||||| || |||||| |||||| ||| | ||||||||||||||||||||||||    
T  48697352 attctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccact 48697277  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 48702041 - 48701966
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | ||||||||| || |||||| |||||| ||| | ||||||||||||||||||||||||    
T  48702041 attctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccact 48701966  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 34352345 - 34352420
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | |||||||||||| |||||| |||||| ||| | ||||||||||||||||||||||||    
T  34352345 attctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccact 34352420  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 34360053 - 34360128
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | |||||||||||| |||||| |||||| ||| | ||||||||||||||||||||||||    
T  34360053 attctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccact 34360128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 29585520 - 29585445
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | |||||||||||| ||||||  ||||| ||| | ||||||||||||||||||||||||    
T  29585520 attctcctatttataagagagagtggtaattgtactctctttgtagttagagagaggtcctgtaatttcttccact 29585445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 41718507 - 41718582
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | ||||||||| || |||||| |||||| ||| | ||||||||||||||||||||||||    
T  41718507 attctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccact 41718582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 41723233 - 41723308
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | ||||||||| || |||||| |||||| ||| | ||||||||||||||||||||||||    
T  41723233 attctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccact 41723308  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 5818733 - 5818658
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | |||||||||||| |||||| |||||| ||| | ||||||||||||||||||||||||    
T  5818733 attctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccact 5818658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 5823495 - 5823420
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | |||||||||||| |||||| |||||| ||| | ||||||||||||||||||||||||    
T  5823495 attctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccact 5823420  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 54545981 - 54546056
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | |||||||||||| |||||| |||||| ||| | ||||||||||||||||| ||||||    
T  54545981 attctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcatccact 54546056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 399
Target Start/End: Complemental strand, 2817463 - 2817407
Alignment:
Q  343 agagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||| ||| |||||| |||||||||| | |||| || ||||||||||||||||    
T  2817463 agagtggtgattgtactctccttgtatttagagagagttcttgtaatttcttccact 2817407  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 9439592 - 9439517
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | ||||||||| || |||||| |||||| ||| | ||||||||||||||||||||||||    
T  9439592 attctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccact 9439517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 9444312 - 9444237
Alignment:
Q  324 attctcctatttttaaaatagagtggtaattttactcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||||||||||| ||| | ||||||||| || |||||| |||||| ||| | ||||||||||||||||||||||||    
T  9444312 attctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccact 9444237  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 399
Target Start/End: Complemental strand, 30697300 - 30697259
Alignment:
Q  358 ctcttcttgtatttataaagaggtcctgtaatttcttccact 399  Q
    |||| |||||||||| ||||||||| ||||||||||||||||    
T  30697300 ctctccttgtatttagaaagaggtcttgtaatttcttccact 30697259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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