View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_high_42 (Length: 345)
Name: NF11768_high_42
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 141860 - 142014
Alignment:
| Q |
1 |
tgcatttggatctcttctctgttttccaccttctttcaagacttgtaagttccgtgtaactctcccttatgagttttcaagttatttatatttattttta |
100 |
Q |
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| T |
141860 |
tgcatttggatctcttctctgttttccaccttctttcaagacttgtaagttccgtgtaactctcccttgtgagttttcaagttatttatatttattttta |
141959 |
T |
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| Q |
101 |
tatgattgagatatatttcatccttcaaagtttaacctaatctttattagttctc |
155 |
Q |
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| T |
141960 |
tatgattgagatatatttcatccttcaaagtttaacctaatctttattagttctc |
142014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 142050 - 142105
Alignment:
| Q |
188 |
aactgtgaaatcttgctagaaggtaatatatattgctagtaatttattttaatgta |
243 |
Q |
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| T |
142050 |
aactgtgaaatcttgctagaaggtaatatatattgctagtaatttattttaatgta |
142105 |
T |
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