View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11768_high_44 (Length: 314)

Name: NF11768_high_44
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11768_high_44
NF11768_high_44
[»] chr4 (10 HSPs)
chr4 (1-296)||(35240702-35240997)
chr4 (1-199)||(35252953-35253151)
chr4 (1-269)||(35286519-35286796)
chr4 (1-218)||(35246328-35246554)
chr4 (1-199)||(35270815-35271019)
chr4 (107-275)||(35283100-35283268)
chr4 (1-76)||(35283015-35283090)
chr4 (1-176)||(35277468-35277652)
chr4 (36-88)||(35237710-35237762)
chr4 (107-142)||(35275183-35275218)
[»] chr2 (1 HSPs)
chr2 (93-145)||(3884292-3884344)


Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 35240702 - 35240997
Alignment:
Q  1 ttacctgaaaaccagcaacaactaagacgtcaggatatcgaggatggaatatgatagactgaaacctcttcccgtctgattgatactcgaatatgcattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35240702 ttacctgaaaaccagcaacaactaagacgtcaggatatcgaggatggaatatgatagactgaaacctcttcccgtctgattgatactcgaatatgcattg 35240801  T
Q  101 tccgtccgaccagacacgtacatcatcttcactgacagaggcaatcatattcccagtgacatcccaacatatggaatttatgtctttgacgtgaccctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35240802 tccgtccgaccagacacgtacatcatcttcactgacagaggcaatcatattcccagtgacatcccaacatatggaatttatgtctttgacgtgaccctat 35240901  T
Q  201 tagggaacaagattcagactcatactgtattaatactatatcatgatacacaactcaaattttaatcaattatatgtcatacgtgaacctcacctt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35240902 tagggaacaagattcagactcatactgtattaatactatatcatgatacacaactcaaattttaatcaattatatgtcatacgtgaacctcacctt 35240997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 35252953 - 35253151
Alignment:
Q  1 ttacctgaaaaccagcaacaactaagacgtcaggatatcgaggatggaatatgatagactgaaacctcttcccgtctgattgatactcgaatatgcattg 100  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |    
T  35252953 ttacctgaaaaccagcaacaactaagacgttagggtatcgaggatggaatatgacagactgaaacctcttcccgtttgattgatactcgaatatgcatcg 35253052  T
Q  101 tccgtccgaccagacacgtacatcatcttcactgacagaggcaatcatattcccagtgacatcccaacatatggaatttatgtctttgacgtgacccta 199  Q
    || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| |||||    
T  35253053 tctgtccgaccagacacgtacttcatcttcactgacagaggcaatcatattcccagtgacgtccaaacatatggaattgatgtctttgacgtgtcccta 35253151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 35286519 - 35286796
Alignment:
Q  1 ttacctgaaaaccagcaacaactaagacgtcaggatatcgaggatggaatatgatagactgaaacctcttcccgtctgattgatactcgaatatgcattg 100  Q
    |||||||||||||| ||||||||||||||| | | |||||||||||||||||||  |||  |||| ||||||| |  ||| |||||||  ||| ||| ||    
T  35286519 ttacctgaaaaccaccaacaactaagacgttacggtatcgaggatggaatatgacggacataaacatcttccctttcgatggatactcatataagcactg 35286618  T
Q  101 tccgtcc---------gaccagacacgtacatcatcttcactgacagaggcaatcatattcccagtgacatcccaacatatggaatttatgtctttgacg 191  Q
    |||||||         | ||||||||||||| ||||| ||||||||||||| ||||| | |||||||||||||||||||| ||||   || | |||||||    
T  35286619 tccgtccatagaaagcgtccagacacgtacaccatctgcactgacagaggcgatcatttgcccagtgacatcccaacataaggaacaaatatatttgacg 35286718  T
Q  192 tgaccctattagggaacaagattcagactcatactgtattaatactatatcatgatacacaactcaaattttaatcaa 269  Q
    || ||||| |||||||  |||||||||||||| ||||| ||||||||| ||||||||||||||| | |||||||||||    
T  35286719 tggccctaatagggaatgagattcagactcatgctgtagtaatactatttcatgatacacaacttacattttaatcaa 35286796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 35246328 - 35246554
Alignment:
Q  1 ttacctgaaaaccagcaacaactaagacgtcaggatatcgaggatggaatatgatagactgaaacctcttcccgtctgattgatactcgaatatgcattg 100  Q
    |||||||||||||| ||| |||||||||| |||| ||||||||||||||||||| |||||||||||| ||||| | |||| ||||||   | ||||||||    
T  35246328 ttacctgaaaaccaccaataactaagacgccagggtatcgaggatggaatatgacagactgaaacctgttcccatttgatggatacttatacatgcattg 35246427  T
Q  101 t----ccgt-----ccgaccagacacgtacatcatcttcactgacagaggcaatcatattcccagtgacatcccaacatatggaatttatgtctttgacg 191  Q
    |    || |     ||||||| |||||||||||||||||| |||||||||||||||| || ||||||||||||||||| |||||||  |||||||||  |    
T  35246428 tttcaccataaaaaccgaccaaacacgtacatcatcttcagtgacagaggcaatcattttaccagtgacatcccaacacatggaatagatgtctttggtg 35246527  T
Q  192 tgaccctattagggaacaagattcaga 218  Q
    || ||||| |||||||| |||||||||    
T  35246528 tgtccctaatagggaacgagattcaga 35246554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 35270815 - 35271019
Alignment:
Q  1 ttacctgaaaaccagcaacaactaagacgtcaggatatcgaggatggaatatgatagactgaaacctcttcccgtctgattgatactcgaatatgcattg 100  Q
    |||||||||||| | ||| ||||||||||| ||| |||||||||||||||||||  ||||||||||||||||| | |||| |||||||  ||||| | |     
T  35270815 ttacctgaaaacaaccaataactaagacgttagggtatcgaggatggaatatgacggactgaaacctcttcccatttgatggatactcatatatggactc 35270914  T
Q  101 tc-cgt-----ccgaccagacacgtacatcatcttcactgacagaggcaatcatattcccagtgacatcccaacatatggaatttatgtctttgacgtga 194  Q
    |  | |     | ||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || || || |||||||||||     
T  35270915 tttcataaaaactgacaaaacacgtacatcatcttcactgacagaggcaatcatattcccagtggcatcccaacatatagacttaatttctttgacgtgt 35271014  T
Q  195 cccta 199  Q
    |||||    
T  35271015 cccta 35271019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 275
Target Start/End: Original strand, 35283100 - 35283268
Alignment:
Q  107 cgaccagacacgtacatcatcttcactgacagaggcaatcatattcccagtgacatcccaacatatggaatttatgtctttgacgtgaccctattaggga 206  Q
    ||||||||||| ||||  |||||||||||||||||| ||  | | || ||||||||||||||||| ||||   || | |||||| |||||||  ||| ||    
T  35283100 cgaccagacacttacacaatcttcactgacagaggcgattgtttgcctagtgacatcccaacataaggaacaaatatttttgacatgaccctgatagaga 35283199  T
Q  207 acaagattcagactcatactgtattaatactatatcatgatacacaactcaaattttaatcaattatat 275  Q
    |  ||||| || |||||  | || || |||||||||||||||||||||||| |||||||||||||||||    
T  35283200 atgagattaaggctcatgttttagtagtactatatcatgatacacaactcacattttaatcaattatat 35283268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 35283015 - 35283090
Alignment:
Q  1 ttacctgaaaaccagcaacaactaagacgtcaggatatcgaggatggaatatgatagactgaaacctcttcccgtc 76  Q
    |||||||||| |||   ||||||||||||| | | | ||||||||||||||||| |||||||||||||||||||||    
T  35283015 ttacctgaaatccactcacaactaagacgttacggtgtcgaggatggaatatgacagactgaaacctcttcccgtc 35283090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 35277468 - 35277652
Alignment:
Q  1 ttacctgaaaaccagcaacaactaagacgtcaggatatcgaggatggaatatgatagactgaaacctcttcccgtctgattgatactcgaatatgcattg 100  Q
    |||||||||||||  ||||||||||||| | | | ||| |||||||||||||||  ||||||||  | ||||||| |||| |||||| ||| | ||||||    
T  35277468 ttacctgaaaaccgccaacaactaagacattacggtattgaggatggaatatgaccgactgaaaattattcccgtttgatggatacttgaaaaagcattg 35277567  T
Q  101 tccgtc---------cgaccagacacgtacatcatcttcactgacagaggcaatcatattcccagtgacatcccaacatatggaa 176  Q
    |||| |         ||||||||||| ||||  |||||| ||||||||||| ||  | | |||||||| ||||||||||| ||||    
T  35277568 tccgcccatagaaagcgaccagacacatacacaatcttcgctgacagaggcgattgtttgcccagtgatatcccaacataaggaa 35277652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 35237710 - 35237762
Alignment:
Q  36 tatcgaggatggaatatgatagactgaaacctcttcccgtctgattgatactc 88  Q
    |||| ||||||||| ||||| ||||||||||||||||| | ||||||||||||    
T  35237710 tatctaggatggaagatgatggactgaaacctcttcccatttgattgatactc 35237762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 142
Target Start/End: Original strand, 35275183 - 35275218
Alignment:
Q  107 cgaccagacacgtacatcatcttcactgacagaggc 142  Q
    |||||| |||||||||||||||||||||||||||||    
T  35275183 cgaccaaacacgtacatcatcttcactgacagaggc 35275218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 3884344 - 3884292
Alignment:
Q  93 atgcattgtccgtccgaccagacacgtacatcatcttcactgacagaggcaat 145  Q
    ||||||| ||||| ||||||||| ||| ||  |||||||||||||||||||||    
T  3884344 atgcattctccgttcgaccagactcgtgcacaatcttcactgacagaggcaat 3884292  T

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