View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_high_46 (Length: 303)
Name: NF11768_high_46
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_high_46 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 16288252 - 16287988
Alignment:
| Q |
19 |
gatatacttttttcac--tatttttgtttgaaaattggannnnnnnnaaatgattgaccaaaaagttaaattatttttaaacacgtcaattaaaaacctt |
116 |
Q |
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| T |
16288252 |
gatatacttttttgacaatatttttgtttgaaaattggattttttt-aaatgattgaccaaaaagttaaattatttttaaacacgtcaattaaaaacctt |
16288154 |
T |
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| Q |
117 |
cgtccaatgatattttaacatgtgccattattgtggtgttgaaccaattatattgcatcatttggtgttgatacgtcttattcttctaatctttttattg |
216 |
Q |
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| T |
16288153 |
cgtccaatgatattttaacatgtgccattattgtggtgttgaaccaattatattgcataatttggtgttgatacgtcttattcttctaatctttttattg |
16288054 |
T |
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| Q |
217 |
cttcaaactttgcctttactaaagaggtatgaaatgatttatctttaattatatttggtcaacaaa |
282 |
Q |
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| T |
16288053 |
cttcaaactttgcctttactaaagaggtatgaaatgatttatctttaattatatttggtcaacaaa |
16287988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 175
Target Start/End: Complemental strand, 14875124 - 14875031
Alignment:
| Q |
82 |
ttaaattatttttaaacacgtcaattaaaaaccttcgtccaatgatattttaacatgtgccattattgtggtgttgaaccaattatattgcatc |
175 |
Q |
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| T |
14875124 |
ttaaattatttttgaacacgtcaattaaaattttacgttcgatgatatcataacatgtgtcattagtgtgttgttgagccaattatattacatc |
14875031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 32024363 - 32024438
Alignment:
| Q |
96 |
aacacgtcaattaaaaaccttcgtccaatgatattttaacatgtgccattattgtggtgttgaaccaattatattg |
171 |
Q |
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| T |
32024363 |
aacacgtcatttaaaaaatttcatccaatggtattttaacatgtgtgattattgtgttgttgagccaatcatattg |
32024438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 6442609 - 6442558
Alignment:
| Q |
231 |
tttactaaagaggtatgaaatgatttatctttaattatatttggtcaacaaa |
282 |
Q |
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| T |
6442609 |
tttactaaacaggtatgaagtgatcaatctttaattttatttggtcaacaaa |
6442558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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