View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11768_high_60 (Length: 240)
Name: NF11768_high_60
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_high_60 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 27181419 - 27181207
Alignment:
| Q |
18 |
gattctgctaaagctccaggtattgatggtttcaatgttcattttttcaaaactacttggaatattataggagatagtgtcattgatgcaattggtgagt |
117 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||| | ||| |||||||||| |
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| T |
27181419 |
gattctgccaaagctccaggtattgatggattcaatgttcatttttacataactacttggaatattataggagatagtgtcactactgctattggtgagt |
27181320 |
T |
|
| Q |
118 |
tctttaggactggatttatgcctagaattatcaataatacttatgtgacattgattgctaaagtaccaaatgctacttctattaagaactttagacctat |
217 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| || ||||||| ||||||| ||||| ||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
27181319 |
tctttaagactggatttatgcctagacttataaacaatacttttgtgacactgattcctaaagtaccaaatgctacctatattaagaactttagacctat |
27181220 |
T |
|
| Q |
218 |
agcttgctgctct |
230 |
Q |
| |
|
|||||| |||||| |
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|
| T |
27181219 |
agcttgttgctct |
27181207 |
T |
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Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 5668593 - 5668805
Alignment:
| Q |
18 |
gattctgctaaagctccaggtattgatggtttcaatgttcattttttcaaaactacttggaatattataggagatagtgtcattgatgcaattggtgagt |
117 |
Q |
| |
|
|||||||| |||||| |||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| || || |||| ||||| |
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| T |
5668593 |
gattctgccaaagcttcaggtattgatgaattcaatgtacattttttcaaaactacttgaaatattataggagatagtgtcactgctgatattgatgagt |
5668692 |
T |
|
| Q |
118 |
tctttaggactggatttatgcctagaattatcaataatacttatgtgacattgattgctaaagtaccaaatgctacttctattaagaactttagacctat |
217 |
Q |
| |
|
|||||||||| |||||||||||||| || | ||||||||||||| |||| | ||| ||||||||||||||||||| ||| ||||| ||||| |||||| |
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|
| T |
5668693 |
tctttaggacatgatttatgcctagagttgtgaataatacttatgcgacactaattactaaagtaccaaatgctacctcttctaagagctttatacctat |
5668792 |
T |
|
| Q |
218 |
agcttgctgctct |
230 |
Q |
| |
|
|||||| |||||| |
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|
| T |
5668793 |
agcttgttgctct |
5668805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 3939936 - 3939795
Alignment:
| Q |
25 |
ctaaagctccaggtattgatggtttcaatgttcattttttcaaaactacttggaatattataggagatagtgtcattgatgcaattggtgagttctttag |
124 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| || ||| ||||||| ||||| || ||||||||||||||||| || || ||||||| |
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| T |
3939936 |
ctaaagctccaggtattgatggttacaatgttcatttctttaaatgctcttggaacattattggtgatagtgtcattgatgctatattagatttctttaa |
3939837 |
T |
|
| Q |
125 |
gactggatttatgcctagaattatcaataatacttatgtgac |
166 |
Q |
| |
|
||||||||| ||||||| |||||| || |||||||||||| |
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|
| T |
3939836 |
gactggattcatgcctaaaattattaactgtacttatgtgac |
3939795 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 40953006 - 40953186
Alignment:
| Q |
25 |
ctaaagctccaggtattgatggtttcaatgttcattttttcaaaactacttggaatattataggagatagtgtcattgatgcaattggtgagttctttag |
124 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||||||||||||| ||||||||||||||| || | |||||||||||||| || || | |||||| |
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|
| T |
40953006 |
ctaaagccccaggtattgatggctttaatgttcattttttcaaaagtacttggaatattattggcgcaagtgtcattgatgctgttatagaatactttag |
40953105 |
T |
|
| Q |
125 |
gactggatttatgcctagaattatcaataatacttatgtgacattgattgctaaagtaccaaatgctacttctattaagaa |
205 |
Q |
| |
|
|||||||| |||||||||||||| || | ||| |||||||| ||||| ||||| |||||||||| || || |||||||| |
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|
| T |
40953106 |
aactggattcatgcctagaattataaacagtacatatgtgactttgatacctaaaataccaaatgccacatcaattaagaa |
40953186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 1159781 - 1159961
Alignment:
| Q |
25 |
ctaaagctccaggtattgatggtttcaatgttcattttttcaaaactacttggaatattataggagatagtgtcattgatgcaattggtgagttctttag |
124 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||||||||||||| ||||||||||||||| |||| ||||||| |||||| ||| || | |||||| |
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|
| T |
1159781 |
ctaaagccccaggtattgatggctttaatgttcattttttcaaaagtacttggaatattattggagcaagtgtcaatgatgctattatagaatactttag |
1159880 |
T |
|
| Q |
125 |
gactggatttatgcctagaattatcaataatacttatgtgacattgattgctaaagtaccaaatgctacttctattaagaa |
205 |
Q |
| |
|
|||| ||| |||||||||||||| || | ||| |||||||| ||||| ||||| |||||||||| || || |||||||| |
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|
| T |
1159881 |
aactgaattcatgcctagaattataaacagtacatatgtgactttgatacctaaaataccaaatgccacatcaattaagaa |
1159961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 23121706 - 23121886
Alignment:
| Q |
25 |
ctaaagctccaggtattgatggtttcaatgttcattttttcaaaactacttggaatattataggagatagtgtcattgatgcaattggtgagttctttag |
124 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||||||||||||| ||||||||||||||| |||| ||||||| |||||| || || | |||||| |
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|
| T |
23121706 |
ctaaagccccaggtattgatggctttaatgttcattttttcaaaagtacttggaatattattggagcaagtgtcactgatgcttttatagaatactttag |
23121805 |
T |
|
| Q |
125 |
gactggatttatgcctagaattatcaataatacttatgtgacattgattgctaaagtaccaaatgctacttctattaagaa |
205 |
Q |
| |
|
|||| ||| |||||||||||||| || | ||| |||||||| ||||| ||||| |||||||||| || || |||||||| |
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|
| T |
23121806 |
aactgtattcatgcctagaattataaacagtacatatgtgactttgatacctaaaataccaaatgccacatcaattaagaa |
23121886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 33633185 - 33633062
Alignment:
| Q |
25 |
ctaaagctccaggtattgatggtttcaatgttcattttttcaaaactacttggaatattataggagatagtgtcattgatgcaattggtgagttctttag |
124 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||| || ||||||||||||||||| || || ||||||| |
|
|
| T |
33633185 |
ctaaagctccaggtattgatggttacaatgttcatttctttaaatgctcttggaatattattggtgatagtgtcattgatgctatattagatttctttaa |
33633086 |
T |
|
| Q |
125 |
gactggatttatgcctagaattat |
148 |
Q |
| |
|
||||||||| ||||||| |||||| |
|
|
| T |
33633085 |
gactggattcatgcctaaaattat |
33633062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 18263106 - 18262965
Alignment:
| Q |
25 |
ctaaagctccaggtattgatggtttcaatgttcattt-tttcaaaactacttggaatattataggagatagtgtcattgatgcaattggtgagttcttta |
123 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||| || ||| ||||||| ||||| || |||||||||||||||| || || ||||||| |
|
|
| T |
18263106 |
ctaaagctccaggtattgatggttacaatgttcatttctttaaatact-cttggaacattattggtgatagtgtcattgatgttatatcagatttcttta |
18263008 |
T |
|
| Q |
124 |
ggactggatttatgcctagaattatcaataatacttatgtgac |
166 |
Q |
| |
|
||||||||| ||||||| |||||| || |||||||||||| |
|
|
| T |
18263007 |
agactggattcatgcctaaaattattaactgtacttatgtgac |
18262965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 30282202 - 30282055
Alignment:
| Q |
25 |
ctaaagctccaggtattgatggtttcaatgttcattttttcaaaactacttggaatattataggagatagtgtcattgatgcaattggtgagttctttag |
124 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| || ||| ||||||| ||||| || ||||||||||||||||| || || ||||||| |
|
|
| T |
30282202 |
ctaaagctccaggtattgatggttacaatgttcatttctttaaatgctcttggaacattattggtgatagtgtcattgatgctatattagatttctttaa |
30282103 |
T |
|
| Q |
125 |
gactggatttatgcctagaattatcaataatacttatgtgacattgat |
172 |
Q |
| |
|
||||||||| ||||||| |||||| || | ||||||| |||| ||||| |
|
|
| T |
30282102 |
gactggattcatgcctaaaattattaacagtacttatatgactttgat |
30282055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 20832633 - 20832568
Alignment:
| Q |
58 |
attttttcaaaactacttggaatattataggagatagtgtcattgatgcaattggtgagttcttta |
123 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| |||| |||||||| |||| ||||||||||||||| |
|
|
| T |
20832633 |
attttttcaaaagtacttggaatattgtaggggatattgtcattgttgcagttggtgagttcttta |
20832568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 35168211 - 35168063
Alignment:
| Q |
18 |
gattctgctaaagctccaggtattgatggtttcaatgttcattttttcaaaactacttggaatattataggagatagtgtcattgatgcaattggtgagt |
117 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| || ||||| ||| || ||| ||||||| ||||| || ||||||||||||||||| || || | |
|
|
| T |
35168211 |
gattcttctaaggctccaggtattgatggttacagtgttcgtttctttaaatgctcttggaacattattggtgatagtgtcattgatgctatattagaat |
35168112 |
T |
|
| Q |
118 |
tctttaggactggatttatgcctagaattatcaataatacttatgtgac |
166 |
Q |
| |
|
|||||| |||||| || ||||||| |||||||| ||||||||||||| |
|
|
| T |
35168111 |
tctttaagactggtttcatgcctaatattatcaactatacttatgtgac |
35168063 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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