View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11768_high_8 (Length: 610)
Name: NF11768_high_8
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_high_8 |
 | |
|
| [»] scaffold0236 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0236 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 11 - 588
Target Start/End: Complemental strand, 21199 - 20622
Alignment:
| Q |
11 |
tcagcaccaagtccgatagcaatatcactgtcgttactgataccggggggtaccgttaccccagccctaatcatagtcacaataccgggcgcttgggtaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21199 |
tcagcaccaagtccgatagcaatatcacggtcgttactgataccggggggtaccgttaccccagccctaatcatagtcacactaccgggcgcttgggtaa |
21100 |
T |
|
| Q |
111 |
atggtgacaagattgttctgccaagaaaaatatcatcttttcctaaccaccaaacgatgacttcaacgtttttgtaagaaacgatttgttcatcgtagtt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
21099 |
atggtgacaagattgttctgccaagaaaaatatcatcttttcctgaccaccaaacgatgacttcaacgtttttgtaacaaacgattttttcatcgtagtt |
21000 |
T |
|
| Q |
211 |
gggagcatggaaaaataatgttaaattcaatgtggccgttaaatcaacggcttgagtattgagggatgttacggtgatagagttgagatgaacaaggggg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20999 |
gggagcatggaaaaataatgttaaattcaatgtggccgttaaatcaacggcttgagtattgagggatgttacggtgatagagtcgagatgaacaaggggg |
20900 |
T |
|
| Q |
311 |
gtgttgagtttaaggggggttataaataggctaagaaaagcaaggtttgtaatgccaatgaaaaggcaaaggaacatggtgcagagagtgaagaaaatgg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20899 |
gtgttgagtttaaggggggttataaataggctaagaaaagcaaggtttgtaatgccaatgaaaaggcaaaggaacatggtgcagagagtgaagaaaatgg |
20800 |
T |
|
| Q |
411 |
ccttcacatcggaagtgagtgaagaaacggtgtcagaaatgatggatatggattttgcaatgaaggatgccatggatgtgatactgttgttacttgaagg |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20799 |
ccttcacatcggaagtgagtgaagaaacggtgtcagacatgatggatatggattttgcaatgaaggatgccatggatgtgatactgttgttacttgaagg |
20700 |
T |
|
| Q |
511 |
tgatgtgaagaagtgaactaaaagtgttgttataaatagagggagaagaatgcatgaaagtgcgtgtttttgttgtta |
588 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20699 |
tgatgtgaagaaatgaactaaaagtgttgttataaatagagggagaagaatgcatgaaagtgcgtgtttttgttgtta |
20622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University