View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11768_high_9 (Length: 606)
Name: NF11768_high_9
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 19 - 531
Target Start/End: Complemental strand, 6615247 - 6614745
Alignment:
| Q |
19 |
tacatgtcgtccattcaagaggtctcacactcacaacaagagttaaattcaaaactttatgggctagtcagctcattattattaattgttccttaaaaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6615247 |
tacatgtcgtccattcaagaggtctcacactcacaacaagagttaaattcaaaactttatgggctagtcagctcattattattaattgttccttaaaaaa |
6615148 |
T |
|
| Q |
119 |
gaaggnnnnnnnngctcattattatttgaggcaatattcaggattctctggacacattgctgactgttctgacattcttattgctgaattgcaagcaatc |
218 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6615147 |
gaag--aaaaaaagctcattattaattgaggcaatattcaggattctctggacacattgctgactgttctgacattcttattgctgaattgcaagcaatc |
6615050 |
T |
|
| Q |
219 |
tatcaaggattgcgcatggttagagctctaggaatatctgattttgtgtgctactccgattcgctccattcggtcagcctcatcaacggtcctcctttga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6615049 |
tatcaaggattgcgcatggttagagctctaggaatatctgattttgtgtgctactccgattcgctccattcggtcagcctcatcaacggtccacctttga |
6614950 |
T |
|
| Q |
319 |
attttcatacctacgcggctacgccactcttattcatgatattaaggacttgatcattctcatcagttcttctatttttcatactcttcggaaggggaat |
418 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| |
|
|
| T |
6614949 |
attttcatacct--------acgccactcttattcatgatattaaggacttgatcattctcatcggttcttctatttttcatactcttcgggaggagaat |
6614858 |
T |
|
| Q |
419 |
cattgcgccaattttctagctaaaatgggagcggctacggatgttgttttgacttttcatgtttctgcactagaagagatgttaccgcttattagggaag |
518 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6614857 |
cattgcgccgattttctagctaaaatgggagcggctacggatgttgttttgacttttcatgcttctgcaccagaagagatgttaccgcttattagggaag |
6614758 |
T |
|
| Q |
519 |
atgcttgtggaac |
531 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
6614757 |
atgcctgtggaac |
6614745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 40924342 - 40924400
Alignment:
| Q |
249 |
ggaatatctgattttgtgtgctactccgattcgctccattcggtcagcctcatcaacgg |
307 |
Q |
| |
|
||||||| ||||||||||||||||||||| || ||||| | || |||||||||||||| |
|
|
| T |
40924342 |
ggaatatatgattttgtgtgctactccgactctctccactttgttagcctcatcaacgg |
40924400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 326
Target Start/End: Complemental strand, 2127028 - 2126958
Alignment:
| Q |
256 |
ctgattttgtgtgctactccgattcgctccattcggtcagcctcatcaacggtcctcctttgaattttcat |
326 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| || |||||||||||||| ||||| |||| |||||| |
|
|
| T |
2127028 |
ctgattttgtgtgctactccgactccttccattctgttagcctcatcaacggacctcccatgaagtttcat |
2126958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 31727737 - 31727681
Alignment:
| Q |
249 |
ggaatatctgattttgtgtgctactccgattcgctccattcggtcagcctcatcaac |
305 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||||| || || |||||||||||| |
|
|
| T |
31727737 |
ggaatatccgattttgtgtgctactccgactctctccactccgttagcctcatcaac |
31727681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 42923672 - 42923615
Alignment:
| Q |
249 |
ggaatatctgattttgtgtgctactccgattcgctccattcggtcagcctcatcaacg |
306 |
Q |
| |
|
|||||||| ||||| |||||||||||| | || ||||| ||||| ||||||||||||| |
|
|
| T |
42923672 |
ggaatatccgatttcgtgtgctactccaactctctccactcggttagcctcatcaacg |
42923615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University