View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11768_low_11 (Length: 582)

Name: NF11768_low_11
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11768_low_11
NF11768_low_11
[»] chr6 (24 HSPs)
chr6 (368-566)||(14529303-14529501)
chr6 (113-286)||(14529049-14529222)
chr6 (1-84)||(14533024-14533107)
chr6 (2-84)||(14528299-14528381)
chr6 (493-561)||(14533405-14533473)
chr6 (188-286)||(21381453-21381551)
chr6 (185-283)||(12158974-12159072)
chr6 (189-283)||(12650088-12650181)
chr6 (206-286)||(7793261-7793341)
chr6 (209-285)||(17186750-17186826)
chr6 (431-491)||(14523572-14523632)
chr6 (113-161)||(21955533-21955581)
chr6 (206-282)||(13246660-13246736)
chr6 (214-286)||(30792966-30793038)
chr6 (185-260)||(21955607-21955681)
chr6 (206-260)||(15584301-15584355)
chr6 (123-161)||(17186875-17186913)
chr6 (120-157)||(7793174-7793211)
chr6 (113-162)||(13192942-13192991)
chr6 (185-269)||(26289201-26289284)
chr6 (113-161)||(30792866-30792914)
chr6 (123-158)||(12650210-12650245)
chr6 (228-286)||(20805803-20805861)
chr6 (113-161)||(13246779-13246827)
[»] chr3 (36 HSPs)
chr3 (113-286)||(30846952-30847124)
chr3 (113-286)||(18430900-18431073)
chr3 (113-270)||(30738688-30738843)
chr3 (113-262)||(46552695-46552844)
chr3 (185-286)||(21224011-21224111)
chr3 (185-284)||(39993142-39993240)
chr3 (170-286)||(19680693-19680806)
chr3 (125-286)||(36735019-36735178)
chr3 (120-286)||(47257489-47257652)
chr3 (127-286)||(30433927-30434085)
chr3 (214-286)||(35924917-35924989)
chr3 (185-261)||(41118400-41118476)
chr3 (185-260)||(12113345-12113419)
chr3 (113-250)||(1362950-1363087)
chr3 (113-286)||(26504952-26505122)
chr3 (113-161)||(21224139-21224187)
chr3 (185-261)||(38751452-38751527)
chr3 (125-286)||(17578761-17578915)
chr3 (185-283)||(24475610-24475708)
chr3 (185-251)||(29251335-29251400)
chr3 (207-273)||(32814129-32814195)
chr3 (113-286)||(45406412-45406587)
chr3 (120-161)||(21696781-21696822)
chr3 (120-161)||(24475547-24475588)
chr3 (113-161)||(7719758-7719806)
chr3 (113-153)||(12113437-12113477)
chr3 (214-273)||(775669-775728)
chr3 (113-159)||(35924812-35924858)
chr3 (113-159)||(47117662-47117708)
chr3 (213-250)||(31681834-31681871)
chr3 (213-278)||(31901104-31901169)
chr3 (213-250)||(31916824-31916861)
chr3 (213-250)||(31950502-31950539)
chr3 (214-250)||(7719856-7719892)
chr3 (208-260)||(21696890-21696942)
chr3 (206-246)||(47117289-47117329)
[»] chr8 (27 HSPs)
chr8 (115-259)||(44400451-44400594)
chr8 (113-286)||(21511558-21511730)
chr8 (113-286)||(11660569-11660741)
chr8 (113-286)||(11669738-11669910)
chr8 (185-273)||(31801251-31801338)
chr8 (185-286)||(33561965-33562065)
chr8 (209-286)||(2179206-2179283)
chr8 (185-286)||(26624022-26624123)
chr8 (214-286)||(12177851-12177923)
chr8 (214-286)||(12422279-12422351)
chr8 (185-285)||(17934262-17934362)
chr8 (123-286)||(41636414-41636577)
chr8 (113-282)||(32821616-32821781)
chr8 (229-286)||(25328686-25328743)
chr8 (185-286)||(45364219-45364318)
chr8 (113-284)||(32178313-32178479)
chr8 (113-250)||(41844889-41845025)
chr8 (123-286)||(775291-775451)
chr8 (123-286)||(780945-781105)
chr8 (185-286)||(5967341-5967440)
chr8 (113-159)||(17934387-17934433)
chr8 (214-284)||(25735949-25736019)
chr8 (120-161)||(31801201-31801242)
chr8 (185-250)||(33937117-33937181)
chr8 (207-259)||(13415910-13415962)
chr8 (208-273)||(788696-788761)
chr8 (209-282)||(5335642-5335715)
[»] chr7 (27 HSPs)
chr7 (120-269)||(13953710-13953857)
chr7 (113-286)||(37597280-37597450)
chr7 (127-286)||(13954315-13954473)
chr7 (185-283)||(28606124-28606221)
chr7 (113-286)||(28606648-28606818)
chr7 (215-286)||(45234599-45234670)
chr7 (185-286)||(12407990-12408089)
chr7 (206-286)||(12392125-12392205)
chr7 (113-286)||(17221964-17222136)
chr7 (185-261)||(28919035-28919111)
chr7 (185-273)||(37668581-37668669)
chr7 (215-278)||(9157789-9157852)
chr7 (120-261)||(25318015-25318155)
chr7 (124-259)||(43094624-43094756)
chr7 (113-160)||(36802919-36802966)
chr7 (223-273)||(8319947-8319997)
chr7 (113-160)||(9157676-9157723)
chr7 (113-160)||(45234499-45234546)
chr7 (189-235)||(2355197-2355243)
chr7 (115-161)||(21698787-21698833)
chr7 (237-283)||(42834702-42834748)
chr7 (120-161)||(28918970-28919011)
chr7 (120-160)||(8320037-8320077)
chr7 (114-160)||(28336939-28336985)
chr7 (215-260)||(5277737-5277782)
chr7 (127-160)||(48268811-48268844)
chr7 (214-250)||(29782000-29782036)
[»] chr2 (24 HSPs)
chr2 (113-286)||(39952126-39952295)
chr2 (113-286)||(41670079-41670252)
chr2 (113-283)||(41399068-41399239)
chr2 (206-286)||(32493538-32493618)
chr2 (207-282)||(3436405-3436480)
chr2 (185-283)||(6201388-6201485)
chr2 (206-283)||(14660677-14660754)
chr2 (185-282)||(42461024-42461120)
chr2 (206-286)||(7634756-7634835)
chr2 (113-261)||(21646995-21647137)
chr2 (113-159)||(33891762-33891808)
chr2 (185-286)||(16751304-16751405)
chr2 (124-249)||(5997897-5998021)
chr2 (206-250)||(9621044-9621088)
chr2 (214-286)||(27330569-27330641)
chr2 (113-160)||(21202485-21202532)
chr2 (113-159)||(21200170-21200216)
chr2 (113-159)||(32493663-32493709)
chr2 (113-153)||(7634665-7634705)
chr2 (113-161)||(27330471-27330519)
chr2 (113-159)||(3436512-3436558)
chr2 (119-153)||(16751251-16751285)
chr2 (206-251)||(28176365-28176410)
chr2 (113-157)||(14660399-14660443)
[»] chr5 (24 HSPs)
chr5 (123-286)||(394290-394451)
chr5 (113-286)||(5841318-5841493)
chr5 (113-285)||(7861300-7861469)
chr5 (113-283)||(42522125-42522293)
chr5 (189-286)||(10378801-10378898)
chr5 (185-286)||(15834845-15834945)
chr5 (113-283)||(865606-865772)
chr5 (113-261)||(36080597-36080743)
chr5 (113-286)||(36977411-36977583)
chr5 (113-283)||(9771758-9771925)
chr5 (206-283)||(13146158-13146235)
chr5 (120-160)||(2068424-2068464)
chr5 (214-278)||(32270430-32270494)
chr5 (113-160)||(6812692-6812739)
chr5 (113-286)||(35286012-35286185)
chr5 (206-284)||(25825070-25825148)
chr5 (113-159)||(32270343-32270389)
chr5 (206-286)||(12220208-12220286)
chr5 (208-273)||(43583509-43583574)
chr5 (113-161)||(15936946-15936994)
chr5 (113-161)||(25824979-25825027)
chr5 (113-159)||(10192714-10192760)
chr5 (113-159)||(26244398-26244444)
chr5 (128-161)||(10378745-10378778)
[»] chr4 (21 HSPs)
chr4 (113-286)||(50679823-50679994)
chr4 (206-284)||(32156536-32156614)
chr4 (185-282)||(9686541-9686638)
chr4 (208-286)||(25142258-25142336)
chr4 (113-286)||(42746648-42746818)
chr4 (206-286)||(24970043-24970123)
chr4 (189-260)||(51717705-51717776)
chr4 (211-273)||(24234878-24234940)
chr4 (185-286)||(35321535-35321634)
chr4 (207-285)||(19300205-19300283)
chr4 (115-161)||(49491935-49491981)
chr4 (113-161)||(16304418-16304466)
chr4 (206-270)||(49491827-49491891)
chr4 (113-160)||(49402455-49402502)
chr4 (120-161)||(16476387-16476428)
chr4 (214-286)||(180479-180551)
chr4 (113-160)||(25142186-25142233)
chr4 (185-232)||(37874586-37874633)
chr4 (113-158)||(51717632-51717677)
chr4 (123-159)||(599586-599622)
chr4 (189-265)||(42890150-42890225)
[»] chr1 (25 HSPs)
chr1 (172-286)||(12880296-12880410)
chr1 (185-286)||(12628710-12628811)
chr1 (120-286)||(25891884-25892054)
chr1 (206-273)||(46284126-46284193)
chr1 (185-283)||(29152797-29152894)
chr1 (193-286)||(6492375-6492467)
chr1 (206-286)||(15802063-15802143)
chr1 (206-286)||(51161801-51161881)
chr1 (189-286)||(10891454-10891552)
chr1 (185-286)||(36700069-36700170)
chr1 (185-286)||(36716173-36716274)
chr1 (214-286)||(41811999-41812071)
chr1 (206-261)||(33015289-33015344)
chr1 (206-260)||(52042705-52042759)
chr1 (185-286)||(13573217-13573317)
chr1 (113-161)||(6492501-6492549)
chr1 (222-286)||(11830742-11830806)
chr1 (113-161)||(23027016-23027064)
chr1 (113-161)||(41812121-41812169)
chr1 (113-161)||(43413461-43413509)
chr1 (117-160)||(34898875-34898918)
chr1 (123-161)||(10891399-10891437)
chr1 (120-160)||(5720123-5720162)
chr1 (113-161)||(33015196-33015244)
chr1 (214-274)||(52019677-52019736)
[»] scaffold0027 (1 HSPs)
scaffold0027 (113-286)||(116659-116831)
[»] scaffold1505 (1 HSPs)
scaffold1505 (214-286)||(865-937)
[»] scaffold0024 (1 HSPs)
scaffold0024 (185-262)||(42204-42280)
[»] scaffold0006 (1 HSPs)
scaffold0006 (175-261)||(160948-161033)
[»] scaffold0001 (1 HSPs)
scaffold0001 (237-286)||(183771-183820)
[»] scaffold0070 (1 HSPs)
scaffold0070 (214-258)||(30101-30145)


Alignment Details
Target: chr6 (Bit Score: 167; Significance: 4e-89; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 368 - 566
Target Start/End: Original strand, 14529303 - 14529501
Alignment:
Q  368 ggctctaaagccgaccagtcaagttatccaaaatcagattagtaataggtgtcttacaccaacaacatgtttataaaaaactcattacattggtctgctt 467  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||  | |||    
T  14529303 ggctctaaagccgaccagtcaagttatccaaaatcagattagtcataggtgtcttacaccaacaacatgtttacaaaaaactcattacattgg--tactt 14529400  T
Q  468 tcagtttcaacgcatgcttaagatt--aaacaatagttatgattgaaagagaatacatggattcttatcaaaggtaaattagaatctacttctttagttt 565  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14529401 tcagtttcaacgcatgcttaagattaaaaacaatagttatgattgaaagagaatacatggattcttatcaaaggtaaattagaatctacttctttagttt 14529500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 113 - 286
Target Start/End: Original strand, 14529049 - 14529222
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||        |||||||||| |||||||||||||||||||||||| |||||||    
T  14529049 aaatgaaatctttcaaaaatgatttttatgaaaagctgtttgaaatagcttttttttagagaatttttttcgaaattttagtatccaaagaaaattataa 14529148  T
Q  213 taaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| || ||||||||    
T  14529149 taaaatgatgaaatacttagaataacattttaagataaacttttcaaacaaaattttcattaaaaactttcctt 14529222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 14533024 - 14533107
Alignment:
Q  1 cgataataataagtgttgttccgtttcgacatggccacaaccggagacacacaagcaagcttatgaagaaatgacgcctctaga 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14533024 cgataataataagtgttgttccgtttcgacatggccacaaccggagacacacaagcaagcttatgaagaaatgacgcctctaga 14533107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 14528299 - 14528381
Alignment:
Q  2 gataataataagtgttgttccgtttcgacatggccacaaccggagacacacaagcaagcttatgaagaaatgacgcctctaga 84  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||    
T  14528299 gataataataagtgttgttccgtttcgacatggccacaaccagagacacacaagcaatctaatgaagaaatgacgcctctaga 14528381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 493 - 561
Target Start/End: Original strand, 14533405 - 14533473
Alignment:
Q  493 aaacaatagttatgattgaaagagaatacatggattcttatcaaaggtaaattagaatctacttcttta 561  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14533405 aaacaatggttatgattgaaagtgaatacatggattcttatcaaaggtaaattagaatctacttcttta 14533473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 188 - 286
Target Start/End: Complemental strand, 21381551 - 21381453
Alignment:
Q  188 ttttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||||||||||| || |||||||  ||||||| ||||||||||||| ||||||||||||||| |||| ||||| | |||| ||| ||||||||||||    
T  21381551 ttttagtatccaaaaaaaattataaccaaatgataaaatacttagaatgacattttaagataaactatttaaacagattttttatttgaagctttcctt 21381453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 283
Target Start/End: Complemental strand, 12159072 - 12158974
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttc 283  Q
    ||||||||||||||||| || | ||||| ||||||||||| || ||| ||| |||||||||||||| |||||||||| || |||||||| |||| ||||    
T  12159072 aaattttagtatccaaaaaagaatataacaaaatgatgaactatttaaaatgacattttaagataagttattcaaacgaatttttcatttgaagttttc 12158974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 283
Target Start/End: Complemental strand, 12650181 - 12650088
Alignment:
Q  189 tttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttc 283  Q
    ||||||||||||| || ||||||| |||||||||||||||||| ||| ||||||||||||||| |||| ||||  | |||||||| |||||||||    
T  12650181 tttagtatccaaaaaa-attataacaaaatgatgaaatacttaaaatgacattttaagataaactatttaaacgtatttttcatttgaagctttc 12650088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 7793261 - 7793341
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    ||||||| |||||||||||||||||||| | ||||||||||||||| |||||||||  | |||||||| ||| ||||||||    
T  7793261 attataacaaaatgatgaaatacttagacttacattttaagataaactattcaaacggatttttcattcgaaactttcctt 7793341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 285
Target Start/End: Complemental strand, 17186826 - 17186750
Alignment:
Q  209 ataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcct 285  Q
    |||| ||||||||||||||||||| || ||||||||||||||  |||||||||| | |||||||| |||||||||||    
T  17186826 ataacaaaatgatgaaatacttagcatgacattttaagataagctattcaaacagatttttcatttgaagctttcct 17186750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 431 - 491
Target Start/End: Original strand, 14523572 - 14523632
Alignment:
Q  431 aacatgtttataaaaaactcattacattggtctgctttcagtttcaacgcatgcttaagat 491  Q
    |||||||||| |||||||||||||| |||   |||||||||||||||||||||||||||||    
T  14523572 aacatgtttacaaaaaactcattaccttgtaatgctttcagtttcaacgcatgcttaagat 14523632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 21955533 - 21955581
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  21955533 aaatgacatctttcaaaaatgatttttatgaaaagctatttgaaatagc 21955581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 13246736 - 13246660
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagcttt 282  Q
    ||||||| |||| ||||||||||||| ||| |||||||||||||  || |||||||||| |||||||| ||| ||||    
T  13246736 attataacaaaaagatgaaatacttaaaatgacattttaagatatgttgttcaaacaaatttttcatttgaaacttt 13246660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 30792966 - 30793038
Alignment:
Q  214 aaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    ||||| |||||||||||||||| ||||||||| |||| ||||||||||  | |||||||| ||| ||||||||    
T  30792966 aaaataatgaaatacttagaatgacattttaaaataagttattcaaacggatttttcatttgaaactttcctt 30793038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 21955607 - 21955681
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaa 260  Q
    |||||||| |||| ||| || |||||||  ||||||||||||||||||||| | ||||||||||||| ||||||||    
T  21955607 aaattttattatcaaaaaaa-attataaccaaatgatgaaatacttagaatgatattttaagataaactattcaaa 21955681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 15584355 - 15584301
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaagataaattattcaaa 260  Q
    ||||||| |||||| ||||||||||||||| ||||||||||||||  ||||||||    
T  15584355 attataacaaaatgctgaaatacttagaatgacattttaagataagctattcaaa 15584301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 17186913 - 17186875
Alignment:
Q  123 tttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  17186913 tttcaaaaatgatttttatgaaaagctatttgaaatagc 17186875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 7793174 - 7793211
Alignment:
Q  120 atctttcaaaaatgaattttatgaaaagctatttgaaa 157  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  7793174 atctttcaaaaatgatttttatgaaaagctatttgaaa 7793211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 13192991 - 13192942
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagca 162  Q
    |||||||||||||||||||||| |||||||||||| || || ||||||||    
T  13192991 aaatgaaatctttcaaaaatgatttttatgaaaagttaattaaaatagca 13192942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 26289201 - 26289284
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaatttt 269  Q
    |||||||| |||||| | || ||||||| |||||||  ||||| ||| ||| |||||||||||||| ||||||||||||| ||||    
T  26289201 aaattttattatccataaaa-attataacaaaatgaaaaaatatttaaaatgacattttaagataagttattcaaacaaattttt 26289284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 30792866 - 30792914
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    |||||| || |||||||||||| |||||||||||||||||| |||||||    
T  30792866 aaatgacatttttcaaaaatgatttttatgaaaagctatttaaaatagc 30792914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 12650245 - 12650210
Alignment:
Q  123 tttcaaaaatgaattttatgaaaagctatttgaaat 158  Q
    |||||||||||| |||||||||||||||||||||||    
T  12650245 tttcaaaaatgatttttatgaaaagctatttgaaat 12650210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 20805861 - 20805803
Alignment:
Q  228 cttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||| ||| ||||||||||||||  || ||||||||| |||||||| ||||||||||||    
T  20805861 cttaaaatgacattttaagataagctactcaaacaaatttttcatttgaagctttcctt 20805803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 13246827 - 13246779
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    |||||| |||||| |||||||| ||||| ||||| ||||||||||||||    
T  13246827 aaatgacatcttttaaaaatgatttttaagaaaaactatttgaaatagc 13246779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 5e-33; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 113 - 286
Target Start/End: Original strand, 30846952 - 30847124
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    |||||| ||| ||||||||||| ||||||||||| ||||||||||||||        ||||| |||| ||| ||||||||| ||  ||| || |||||||    
T  30846952 aaatgacatcgttcaaaaatgatttttatgaaaaactatttgaaatagctttttttaagagattttt-ttcaaaattttagcataaaaaaaaaattataa 30847050  T
Q  213 taaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
     |||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| ||| ||||||||    
T  30847051 caaaatgatgaaatacttagaatgacattttaagataagttattcaaacaaatttttcatttgaaactttcctt 30847124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 113 - 286
Target Start/End: Original strand, 18430900 - 18431073
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    ||||||||||||||||||||||  |||||||||| |||||||| ||||         | |||  ||| ||| ||||||||||||| ||| |  |||||||    
T  18430900 aaatgaaatctttcaaaaatgatctttatgaaaaactatttgagatagttttttctta-agagattttttcaaaattttagtatcaaaaaataattataa 18430998  T
Q  213 ta-aaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
     | |||||||||||||||||||||||||||||||||||| || |||||||||| ||||| || ||||||||||||    
T  18430999 aacaaatgatgaaatacttagaataacattttaagataagtttttcaaacaaatttttcttttgaagctttcctt 18431073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 113 - 270
Target Start/End: Original strand, 30738688 - 30738843
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnag-agaattttgttcgaaattttagtatccaaagaatattata 211  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||          ||||||||  || ||||||||||||  ||| || ||||||    
T  30738688 aaatgacatctttcaaaaatgatttttatgaaaagctatttgaaatagcattttttttttagaatttt--tcaaaattttagtat--aaaaaaaattata 30738783  T
Q  212 ataaaatgatgaaatacttagaataaca-ttttaagataaattattcaaacaaaattttc 270  Q
    | |||||||||||||||||||||| ||| ||||||||||| ||||||||||||| |||||    
T  30738784 acaaaatgatgaaatacttagaatgacatttttaagataagttattcaaacaaatttttc 30738843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 113 - 262
Target Start/End: Original strand, 46552695 - 46552844
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagc-annnnnnnagagaattttgttcgaaattttagtatccaaaga-atattat 210  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||         |||||  ||| ||| ||||||||||||||||| |  | || |    
T  46552695 aaatgacatctttcaaaaatgatttttatgaaaagctatttgaaatagctttttttttagaga--ttttttcaaaattttagtatccaaaaatttttttt 46552792  T
Q  211 aataaaatgatgaaatacttagaataacattttaagataaattattcaaaca 262  Q
    ||  ||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  46552793 aaccaaatgatgaaatacttagaatgacattttaagataaactattcaaaca 46552844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 21224111 - 21224011
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcc 284  Q
    ||||||||||||  ||| || |||||||| | ||||||||||||||||||| | ||||||||||||| |||||||||| |||||||||| |||| |||||    
T  21224111 aaattttagtataaaaaaaa-attataatcagatgatgaaatacttagaatgatattttaagataaactattcaaacagaattttcatttgaagttttcc 21224013  T
Q  285 tt 286  Q
    ||    
T  21224012 tt 21224011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 185 - 284
Target Start/End: Complemental strand, 39993240 - 39993142
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcc 284  Q
    |||||| |||||||||| || |||| || |||||||||||||||||||||| ||||||||||||||  |||| |||| || |||||||| ||||||||||    
T  39993240 aaatttcagtatccaaaaaa-attaaaacaaaatgatgaaatacttagaatgacattttaagataagctattaaaaccaatttttcatttgaagctttcc 39993142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 170 - 286
Target Start/End: Complemental strand, 19680806 - 19680693
Alignment:
Q  170 agagaattttgttcgaaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaatttt 269  Q
    ||||| |||| ||| ||||||||||||   || || ||||||| ||||||| |||||| ||| ||| ||||||||||||||| |||||||||||| ||||    
T  19680806 agagattttttttcaaaattttagtat---aaaaaaattataacaaaatgacgaaatatttaaaatgacattttaagataaactattcaaacaaattttt 19680710  T
Q  270 cattagaagctttcctt 286  Q
    |||| |||| |||||||    
T  19680709 catttgaagttttcctt 19680693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 286
Target Start/End: Original strand, 36735019 - 36735178
Alignment:
Q  125 tcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnn-agagaattttgttcgaaattttagtatccaaagaatattataataaaatgatga 223  Q
    |||||||||| ||||||||||||||||||||||||||         ||||| ||||  || ||||||| ||||||||| ||| |||||| ||||||||||    
T  36735019 tcaaaaatgatttttatgaaaagctatttgaaatagcttattttttagagattttt--tcaaaattttggtatccaaaaaat-ttataacaaaatgatga 36735115  T
Q  224 aatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    ||||  |||||||||||||||||||||  |||||||||  | |||| ||| |||| |||||||    
T  36735116 aatatctagaataacattttaagataagctattcaaactgattttttatttgaagttttcctt 36735178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 120 - 286
Target Start/End: Original strand, 47257489 - 47257652
Alignment:
Q  120 atctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataataaaatg 219  Q
    ||||||||||||||| ||||||||||| ||||||||||||||        ||||| |||| ||| ||||||||| ||   || || || |||| ||||||    
T  47257489 atctttcaaaaatgatttttatgaaaaactatttgaaatagc-ttgttttagagattttt-ttcaaaattttaggataataaaaaaatgataacaaaatg 47257586  T
Q  220 atgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||||||||||||| | ||||||||||||| || |||||| || |||||||| ||| ||||||||    
T  47257587 atgaaatacttagaattatattttaagataaactaatcaaac-aatttttcatttgaaactttcctt 47257652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 127 - 286
Target Start/End: Complemental strand, 30434085 - 30433927
Alignment:
Q  127 aaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataataaaatgatgaaat 226  Q
    |||||||| ||||||||||||||||||||||||||          |||  ||| ||  ||||||||||||||||| || ||||||| |||||||||||||    
T  30434085 aaaaatgatttttatgaaaagctatttgaaatagcttttttttttagagattttttaaaaattttagtatccaaaaaa-attataacaaaatgatgaaat 30433987  T
Q  227 acttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |  || ||| ||||||||||||||  ||||||||  || |||| ||| ||||||||||||    
T  30433986 atctaaaatgacattttaagataagctattcaaatcaattttttatttgaagctttcctt 30433927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 35924917 - 35924989
Alignment:
Q  214 aaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||||||||||||||||||| | |||||||||||| ||||| ||||| | |||| ||| ||||||||||||    
T  35924917 aaaatgatgaaatacttagaatgatattttaagataagttatttaaacagattttttatttgaagctttcctt 35924989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 41118476 - 41118400
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaac 261  Q
    ||||||||| ||||||| |   |||||| |||||||||||||||||||||| |||||||||||||| || |||||||    
T  41118476 aaattttagcatccaaaaacatttataacaaaatgatgaaatacttagaattacattttaagataagttcttcaaac 41118400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 12113419 - 12113345
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaa 260  Q
    ||||||||||||  ||| || |||||||  ||||||||||||||||||||| ||||||||||||||| ||||||||    
T  12113419 aaattttagtattaaaaaaa-attataaccaaatgatgaaatacttagaatgacattttaagataaactattcaaa 12113345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 250
Target Start/End: Complemental strand, 1363087 - 1362950
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgtt-cgaaattttagtatccaaagaatattata 211  Q
    |||||| ||||||||||||||| ||| ||||||| ||||||||||||||        ||||| |||| ||   ||||||||||||||||| || ||||||    
T  1363087 aaatgacatctttcaaaaatgattttaatgaaaatctatttgaaatagctttcttttagagattttttttaataaattttagtatccaaa-aaaattata 1362989  T
Q  212 ataaaatgatgaaatacttagaataacattttaagataa 250  Q
      |||||||||||||||||| ||  ||||| ||||||||    
T  1362988 tcaaaatgatgaaatacttaaaaagacattctaagataa 1362950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 286
Target Start/End: Original strand, 26504952 - 26505122
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    |||||| |||||||||||| || ||||||||||||||||||||||||||        |||||  ||| ||| |||||||||||||| ||   | || |||    
T  26504952 aaatgacatctttcaaaaaagatttttatgaaaagctatttgaaatagcttctttttagaga--ttttttcaaaattttagtatcc-aatttttttttaa 26505048  T
Q  213 taaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
     ||| | ||||||||||||||||  |||||| ||||||  ||||||||| || |||| ||| | ||||||||||    
T  26505049 caaagtaatgaaatacttagaatgtcattttgagataatatattcaaacgaattttttatttggagctttcctt 26505122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 21224187 - 21224139
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    |||||| ||||||||||||||| ||||||||||| ||||||||||||||    
T  21224187 aaatgatatctttcaaaaatgatttttatgaaaatctatttgaaatagc 21224139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 38751452 - 38751527
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaac 261  Q
    ||||||||| ||||||| || ||||||| ||||||||||||||  |||||| ||||||||||||||  |||||||||    
T  38751452 aaattttagaatccaaaaaa-attataacaaaatgatgaaatatctagaatcacattttaagataagctattcaaac 38751527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 286
Target Start/End: Original strand, 17578761 - 17578915
Alignment:
Q  125 tcaaaaatgaattttatgaaaagctatttgaaatagc-annnnnnnagagaattttgttcgaaattttagtatccaaagaatattataataaaatgatga 223  Q
    |||||||||| |||||||||||||||||||||||| |         |||||  ||| ||| |||||||||| |||||| || ||||||| ||||||||||    
T  17578761 tcaaaaatgatttttatgaaaagctatttgaaataactttttttttagaga--ttttttcaaaattttagtgtccaaa-aaaattataacaaaatgatga 17578857  T
Q  224 aatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||     || ||||||||||||||  ||||||||| || ||||||||  |||||||||||    
T  17578858 aatac-----atgacattttaagataagctattcaaacgaatttttcattttaagctttcctt 17578915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 283
Target Start/End: Original strand, 24475610 - 24475708
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttc 283  Q
    ||||||||  ||||||| || |||  || |||||||||||||| ||||||| || |||||||||||  ||||||||| || |||||||| | |||||||    
T  24475610 aaattttatcatccaaaaaaaatttcaacaaaatgatgaaatatttagaatgacgttttaagataagctattcaaacgaatttttcatttgtagctttc 24475708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 29251335 - 29251400
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaa 251  Q
    ||||||||||||||||| || ||||||| | |||||||||||||||| ||| | |||||||||||||    
T  29251335 aaattttagtatccaaaaaa-attataacacaatgatgaaatacttataattatattttaagataaa 29251400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 32814129 - 32814195
Alignment:
Q  207 ttataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcatt 273  Q
    ||||| ||||||||||||||| ||||||||| ||||||||| ||  ||||||||| || ||||||||    
T  32814129 ttatagtaaaatgatgaaatatttagaataatattttaagagaagctattcaaaccaatttttcatt 32814195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 286
Target Start/End: Original strand, 45406412 - 45406587
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaag-ctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatcc-aaagaatattat 210  Q
    |||||| |||||| |||||| | |||||||||||  ||||||||||||||        ||||| |||| | | || ||||||||||| ||| || |||||    
T  45406412 aaatgacatctttaaaaaataatttttatgaaaaaactatttgaaatagcttttttttagagacttttttccaaagttttagtatccgaaacaaaattat 45406511  T
Q  211 aataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    || |||||||| ||||||||| ||| | ||||||||||||  ||||||||| || |||| |||  || ||||||||    
T  45406512 aacaaaatgataaaatacttacaatgatattttaagataagctattcaaactaattttttatttaaaactttcctt 45406587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 21696781 - 21696822
Alignment:
Q  120 atctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  21696781 atctttcaaaaatgattttcatgaaaagctatttgaaatagc 21696822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 24475547 - 24475588
Alignment:
Q  120 atctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  24475547 atctttcaaaaattatttttatgaaaagctatttgaaatagc 24475588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 7719758 - 7719806
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    |||||| || |||||||||||| |||||||||||| |||||||||||||    
T  7719758 aaatgacatttttcaaaaatgatttttatgaaaagatatttgaaatagc 7719806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 12113477 - 12113437
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctattt 153  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  12113477 aaatgacatctttcaaaaatgatttttatgaaaagctattt 12113437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 273
Target Start/End: Complemental strand, 775728 - 775669
Alignment:
Q  214 aaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcatt 273  Q
    |||||||||||||| ||||||||| ||||||||| ||  ||||||||| || ||||||||    
T  775728 aaaatgatgaaatatttagaataatattttaagagaagctattcaaaccaatttttcatt 775669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 35924812 - 35924858
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaata 159  Q
    |||||| || |||||||||||| |||||||||||| |||||||||||    
T  35924812 aaatgacatttttcaaaaatgatttttatgaaaagttatttgaaata 35924858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 47117708 - 47117662
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaata 159  Q
    |||||| |||||| |||||||| ||||||||||| ||||||||||||    
T  47117708 aaatgacatctttaaaaaatgatttttatgaaaaactatttgaaata 47117662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 31681834 - 31681871
Alignment:
Q  213 taaaatgatgaaatacttagaataacattttaagataa 250  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  31681834 taaaatgttgaaatacttagaatgacattttaagataa 31681871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 31901169 - 31901104
Alignment:
Q  213 taaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaag 278  Q
    ||||||| ||||||||||||||| |||||||||||||   |||||||||  | |||||||| ||||    
T  31901169 taaaatgttgaaatacttagaatgacattttaagatatgatattcaaacggatttttcatttgaag 31901104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 31916861 - 31916824
Alignment:
Q  213 taaaatgatgaaatacttagaataacattttaagataa 250  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  31916861 taaaatgttgaaatacttagaatgacattttaagataa 31916824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 31950539 - 31950502
Alignment:
Q  213 taaaatgatgaaatacttagaataacattttaagataa 250  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  31950539 taaaatgttgaaatacttagaatgacattttaagataa 31950502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 7719856 - 7719892
Alignment:
Q  214 aaaatgatgaaatacttagaataacattttaagataa 250  Q
    |||||||||||||||||||||| || |||||||||||    
T  7719856 aaaatgatgaaatacttagaatgacgttttaagataa 7719892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 21696890 - 21696942
Alignment:
Q  208 tataataaaatgatgaaatacttagaataacattttaagataaattattcaaa 260  Q
    ||||| |||| ||||||||||||||||| ||||||||| ||||  ||||||||    
T  21696890 tataacaaaaagatgaaatacttagaatgacattttaaaataagctattcaaa 21696942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 47117329 - 47117289
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaag 246  Q
    ||||||| |||||||||||||||||| ||| ||||||||||    
T  47117329 attataacaaaatgatgaaatacttaaaattacattttaag 47117289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 115 - 259
Target Start/End: Complemental strand, 44400594 - 44400451
Alignment:
Q  115 atgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataata 214  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||        ||||| |||| ||| ||| ||||||||||||| |||||||||| |    
T  44400594 atgacatctttcaaaaatgatttttatgaaaagctatttgaaatagcctttttttagagattttt-ttcaaaaatttagtatccaaaaaatattataaca 44400496  T
Q  215 aaatgatgaaatacttagaataacattttaagataaattattcaa 259  Q
    ||||||||||||||||||||| | ||||||||||||| |||||||    
T  44400495 aaatgatgaaatacttagaattatattttaagataaactattcaa 44400451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 113 - 286
Target Start/End: Original strand, 21511558 - 21511730
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagaga-attttgttcgaaattttagtatccaaagaatattata 211  Q
    |||||| ||||||||||||||| ||||||||||| | ||||||| ||||        | ||| ||||| ||  ||||||||||||| ||| |||  ||||    
T  21511558 aaatgacatctttcaaaaatgatttttatgaaaatcaatttgaattagcttttttttatagagatttttttgaaaattttagtatcaaaaaaat--tata 21511655  T
Q  212 ataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    | |||||||||||||||||||||| ||||||||||||||  ||||||||| || |||||||| ||||||||||||    
T  21511656 acaaaatgatgaaatacttagaatgacattttaagataatctattcaaacgaacttttcatttgaagctttcctt 21511730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 113 - 286
Target Start/End: Complemental strand, 11660741 - 11660569
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||| |        |||| ||||| ||| ||||||||||||  ||| || |||||||    
T  11660741 aaatgacatctttcaaaaatgatttttatgaaaagctatttgaaataacttgtttttagag-atttttttcaaaattttagtatttaaaaaaaattataa 11660643  T
Q  213 taaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
     |||| | ||||||||||| ||| ||||||||| ||||  |||||||| ||| |||| |||  |||||||||||    
T  11660642 caaaaaggtgaaatacttataatgacattttaaaataagctattcaaataaattttttatttcaagctttcctt 11660569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 113 - 286
Target Start/End: Complemental strand, 11669910 - 11669738
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||| |        |||| ||||| ||| ||||||||||||  ||| || |||||||    
T  11669910 aaatgacatctttcaaaaatgatttttatgaaaagctatttgaaataacttgtttttagag-atttttttcaaaattttagtatttaaaaaaaattataa 11669812  T
Q  213 taaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
     |||| | ||||||||||| ||| ||||||||| ||||  |||||||| ||| |||| |||  |||||||||||    
T  11669811 caaaaaggtgaaatacttataatgacattttaaaataagctattcaaataaattttttatttcaagctttcctt 11669738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 31801251 - 31801338
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcatt 273  Q
    ||||||||||||||||| || ||||||| |||||||||||||||| | ||| ||||||||||||||| |||||||||||| ||||||||    
T  31801251 aaattttagtatccaaacaa-attataacaaaatgatgaaatactaaaaattacattttaagataaactattcaaacaaatttttcatt 31801338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 33561965 - 33562065
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcc 284  Q
    ||||||||||||||||| || ||||||| |||||||| ||||||||| ||| ||||||||||||||  ||||||||| || |||||||| ||| ||||||    
T  33561965 aaattttagtatccaaaaaa-attataacaaaatgataaaatacttataatgacattttaagataagatattcaaacgaatttttcatttgaaactttcc 33562063  T
Q  285 tt 286  Q
    ||    
T  33562064 tt 33562065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 2179283 - 2179206
Alignment:
Q  209 ataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||| |||||||||||||| ||||||| |||||||||||||| ||||||||||| | |||| ||| ||||||||||||    
T  2179283 ataacaaaatgatgaaatatttagaatgacattttaagataagttattcaaacacattttttatttgaagctttcctt 2179206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 26624022 - 26624123
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcc 284  Q
    |||||||| |||||||| || ||||||| ||||| ||||| |||||| ||||||||| ||||||||  ||||||||||||  ||||||| |||| |||||    
T  26624022 aaattttattatccaaaaaaaattataacaaaataatgaagtacttaaaataacattgtaagataatatattcaaacaaatctttcatttgaagttttcc 26624121  T
Q  285 tt 286  Q
    ||    
T  26624122 tt 26624123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 12177923 - 12177851
Alignment:
Q  214 aaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||||||||||||||| ||| |||||||||||||| |||||||||| || |||||||| ||| ||||||||    
T  12177923 aaaatgatgaaatacttaaaatgacattttaagataagttattcaaacgaatttttcatttgaaactttcctt 12177851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 12422351 - 12422279
Alignment:
Q  214 aaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||||||||||||||| ||| |||||||||||||| |||||||||| || |||||||| ||| ||||||||    
T  12422351 aaaatgatgaaatacttaaaatgacattttaagataagttattcaaacgaatttttcatttgaaactttcctt 12422279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 285
Target Start/End: Complemental strand, 17934362 - 17934262
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcc 284  Q
    ||||||||||||||||| || |||||||  ||||||||| |||| |||||| |||||||| |||||| |||||||| | | ||||||||  |||||||||    
T  17934362 aaattttagtatccaaaaaaaattataaccaaatgatgacatacctagaatgacattttaggataaactattcaaatagatttttcattttaagctttcc 17934263  T
Q  285 t 285  Q
    |    
T  17934262 t 17934262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 123 - 286
Target Start/End: Complemental strand, 41636577 - 41636414
Alignment:
Q  123 tttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataataaaatgatg 222  Q
    |||||||||||| ||||||||||||||||||||||||||          |||  ||| ||| ||||||||||||  ||| || |||| ||  ||||||||    
T  41636577 tttcaaaaatgatttttatgaaaagctatttgaaatagcttttttttttagagattttttcaaaattttagtataaaaaaaa-attacaaccaaatgatg 41636479  T
Q  223 aaatacttagaataacattttaagataaattattcaaaca-aaattttcattagaagctttcctt 286  Q
    |||||||| |||| ||||||||||||||| |||||||||| |  |||||||| |||| |||||||    
T  41636478 aaatactttgaatgacattttaagataaactattcaaacagattttttcatttgaagttttcctt 41636414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 113 - 282
Target Start/End: Complemental strand, 32821781 - 32821616
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    |||||| |||||| |||||||| ||||||||||||||||||||||||            |||  ||| ||| ||||||||||||  ||| || |||||||    
T  32821781 aaatgacatcttttaaaaatgatttttatgaaaagctatttgaaata---tttttttttagaggttttttcaaaattttagtataaaaaaaa-attataa 32821686  T
Q  213 taaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagcttt 282  Q
      ||||||||||||||||||||| ||||||||| ||||| |||||||||  | |||||||| ||||||||    
T  32821685 ccaaatgatgaaatacttagaatgacattttaaaataaactattcaaacggatttttcatttgaagcttt 32821616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 25328743 - 25328686
Alignment:
Q  229 ttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    ||||||| |||||||||||||| ||||||||||||| |||||||| ||||||||||||    
T  25328743 ttagaattacattttaagataagttattcaaacaaatttttcatttgaagctttcctt 25328686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 45364318 - 45364219
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcc 284  Q
    ||||||||||||  ||| || ||||||| |||||||||||||||||| ||| |||||||||| |||| ||||||||| || ||||||||  |||||||||    
T  45364318 aaattttagtataaaaaaaa-attataacaaaatgatgaaatacttaaaatgacattttaagttaaactattcaaacgaatttttcatt-taagctttcc 45364221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 113 - 284
Target Start/End: Complemental strand, 32178479 - 32178313
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||||||        |||||  ||| ||| |||||||| |||  |||||  || ||||    
T  32178479 aaatgacatctttcaaaaatgatttttatgaaaagttatttgaaatagctattttttagaga--ttttttcaaaattttaatat-aaaaga--atcataa 32178385  T
Q  213 taaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcc 284  Q
     |||||||||||||| ||| ||| ||| ||||||||||   |||||||| || |||||||| ||||||||||    
T  32178384 caaaatgatgaaatatttaaaatgacaatttaagataagcaattcaaactaacttttcatttgaagctttcc 32178313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 113 - 250
Target Start/End: Complemental strand, 41845025 - 41844889
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    |||||| || ||||||||||   ||||||||||||||||||||||||||          |||  ||| ||| ||||||||||||||||| || |||||||    
T  41845025 aaatgatatatttcaaaaatattttttatgaaaagctatttgaaatagcttttttttttagagattttttcaaaattttagtatccaaaaaa-attataa 41844927  T
Q  213 taaaatgatgaaatacttagaataacattttaagataa 250  Q
     ||||||||||||||  |||||| ||||||||||||||    
T  41844926 caaaatgatgaaatatctagaatcacattttaagataa 41844889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 286
Target Start/End: Original strand, 775291 - 775451
Alignment:
Q  123 tttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataataaaatgatg 222  Q
    |||||||| ||| ||||||||||||||||||||||||||        ||||| | ||  || ||||||||||||  ||| || || |||| |||||||||    
T  775291 tttcaaaactgatttttatgaaaagctatttgaaatagcttttttttagagattatt--tcaaaattttagtataaaaaaaaaat-ataacaaaatgatg 775387  T
Q  223 aaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||||||||   || ||||||||||| |||||||||| || |||||||| |||  |||||||    
T  775388 aaatacttagagagacgttttaagataagttattcaaacgaatttttcatttgaatatttcctt 775451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 286
Target Start/End: Original strand, 780945 - 781105
Alignment:
Q  123 tttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataataaaatgatg 222  Q
    |||||||| ||| ||||||||||||||||||||||||||        ||||| | ||  || ||||||||||||  ||| || || |||| |||||||||    
T  780945 tttcaaaactgatttttatgaaaagctatttgaaatagcttttttttagagattatt--tcaaaattttagtataaaaaaaaaat-ataacaaaatgatg 781041  T
Q  223 aaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||||||||   || ||||||||||| |||||||||| || |||||||| |||  |||||||    
T  781042 aaatacttagagagacgttttaagataagttattcaaacgaatttttcatttgaatatttcctt 781105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 5967440 - 5967341
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcc 284  Q
    ||||||||||||  ||| || |||||||  ||||||||||||| ||||||| ||||||||||||||| ||||||| | || ||| |||| |||| |||||    
T  5967440 aaattttagtat--aaaaaaaattataaccaaatgatgaaatatttagaatgacattttaagataaactattcaatcgaattttccatttgaagttttcc 5967343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 17934433 - 17934387
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaata 159  Q
    |||||| ||||||||||| ||| ||||||||||||||||||||||||    
T  17934433 aaatgacatctttcaaaactgatttttatgaaaagctatttgaaata 17934387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 25736019 - 25735949
Alignment:
Q  214 aaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcc 284  Q
    |||||||| ||||  ||||||| |||||||||||||| ||||| ||| ||| |||||||| ||||||||||    
T  25736019 aaaatgataaaatttttagaattacattttaagataagttattgaaagaaatttttcatttgaagctttcc 25735949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 31801201 - 31801242
Alignment:
Q  120 atctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  31801201 atctttcaaaaatgatttttatgaaaagctatttaaaatagc 31801242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 33937181 - 33937117
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataa 250  Q
    ||||||||||||||||| || ||||||| |||||||| |||||  |||||| ||||||||||||||    
T  33937181 aaattttagtatccaaaaaa-attataacaaaatgataaaatatctagaattacattttaagataa 33937117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 13415962 - 13415910
Alignment:
Q  207 ttataataaaatgatgaaatacttagaataacattttaagataaattattcaa 259  Q
    |||||| || ||||| ||||| |||||||||||||||||||||| ||||||||    
T  13415962 ttataagaatatgattaaatatttagaataacattttaagataagttattcaa 13415910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 273
Target Start/End: Original strand, 788696 - 788761
Alignment:
Q  208 tataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcatt 273  Q
    ||||| |||||||||||||| |||||   || || |||||||| ||||||||||||| ||||||||    
T  788696 tataacaaaatgatgaaatatttagagagacgttgtaagataagttattcaaacaaatttttcatt 788761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 5335715 - 5335642
Alignment:
Q  209 ataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagcttt 282  Q
    |||| ||||||||||||||||||||||  ||||| | | ||| |||||||||| || ||||||||  |||||||    
T  5335715 ataacaaaatgatgaaatacttagaattgcatttaagggtaagttattcaaacgaatttttcatttaaagcttt 5335642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 120 - 269
Target Start/End: Complemental strand, 13953857 - 13953710
Alignment:
Q  120 atctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataataaaatg 219  Q
    ||||||||||||||| ||||||||||||||||||||||||||        ||||| ||||  || ||||||||||||||||| |  ||||||| ||||||    
T  13953857 atctttcaaaaatgatttttatgaaaagctatttgaaatagcttttttttagagattttt--tcaaaattttagtatccaaaaataattataacaaaatg 13953760  T
Q  220 atgaaatacttagaataacattttaagataaattattcaaacaaaatttt 269  Q
    |||||||||||||||| ||||||||| ||||| |||||||||||| ||||    
T  13953759 atgaaatacttagaattacattttaatataaactattcaaacaaattttt 13953710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 113 - 286
Target Start/End: Complemental strand, 37597450 - 37597280
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||         |||| ||||  || ||||||||||||||||| || |||||||    
T  37597450 aaatgacatctttcaaaaatgatttttatgaaaagctatttgaaatagctttttttt-gagattttt--tcaaaattttagtatccaaaaaaaattataa 37597354  T
Q  213 taaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
      ||||||||||||||||||||| |||||||||| |||  ||||||||| || |||||||| ||||||||||||    
T  37597353 ccaaatgatgaaatacttagaatgacattttaagttaagctattcaaacgaatttttcatttgaagctttcctt 37597280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 127 - 286
Target Start/End: Complemental strand, 13954473 - 13954315
Alignment:
Q  127 aaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataataaaatgatgaaat 226  Q
    |||||||| ||||||||||||||||||||||||||         |||| ||||  || |||||||||| |||||| |  ||||||| |||||||||||||    
T  13954473 aaaaatgatttttatgaaaagctatttgaaatagctttttttttgagattttt--tcaaaattttagtttccaaaaataattataacaaaatgatgaaat 13954376  T
Q  227 acttagaataacattttaagataaattattcaaaca-aaattttcattagaagctttcctt 286  Q
    ||||||||| ||||||||||||||| |||||||||| |  |||||||| ||| ||||||||    
T  13954375 acttagaattacattttaagataaactattcaaacagattttttcattcgaaactttcctt 13954315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 185 - 283
Target Start/End: Complemental strand, 28606221 - 28606124
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttc 283  Q
    ||||||||||||  ||| || |||||||  ||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||| |||||||||    
T  28606221 aaattttagtataaaaaaaa-attataaccaaatgatgaaatacttagaatcacattttaagataaactattcaaacaaatttttcatttgaagctttc 28606124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 113 - 286
Target Start/End: Original strand, 28606648 - 28606818
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    |||||| || |||||||||||| ||||||||||||||||||||||||          ||||| ||||  || |||||| |||||||||| || |||||||    
T  28606648 aaatgacatttttcaaaaatgatttttatgaaaagctatttgaaataatttttttttagagattttt--tcaaaattt-agtatccaaaaaaaattataa 28606744  T
Q  213 taaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
     |||||||| ||||||||||||| ||||||||||||||| |||| |||   | |||||||| ||||||||||||    
T  28606745 caaaatgataaaatacttagaatgacattttaagataaactattgaaatggatttttcatttgaagctttcctt 28606818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 45234599 - 45234670
Alignment:
Q  215 aaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    ||||||||||||||||||||| ||||||||||||||| |||| ||||||| |||||||| ||||||||||||    
T  45234599 aaatgatgaaatacttagaatgacattttaagataaactattgaaacaaatttttcattcgaagctttcctt 45234670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 12408089 - 12407990
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcc 284  Q
    ||||||||||||  ||| || |||||||  ||||||||||||||||||||| ||||||||||||||| |||||||| | | |||||||| ||||||||||    
T  12408089 aaattttagtat--aaaaaaaattataacgaaatgatgaaatacttagaatgacattttaagataaactattcaaatagatttttcatttgaagctttcc 12407992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 12392205 - 12392125
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||||  ||||||||||||||||||||| ||||||||||||||| |||||||| | | |||||||| ||||||||||||    
T  12392205 attataacgaaatgatgaaatacttagaatgacattttaagataaactattcaaatagatttttcatttgaagctttcctt 12392125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 113 - 286
Target Start/End: Original strand, 17221964 - 17222136
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    |||||| ||||||||||||| | |||||||||| |||||||||||||||        ||||| |||| ||| |||||||||||||||||   | ||||||    
T  17221964 aaatgatatctttcaaaaataatttttatgaaa-gctatttgaaatagcttttttttagagattttttttcaaaattttagtatccaaaattttttataa 17222062  T
Q  213 taaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
     || |||||||||||| || ||| |||||| |||||||  |||||||||  | |||||||| ||| ||||||||    
T  17222063 caagatgatgaaatacataaaatgacatttgaagataagctattcaaactgatttttcatttgaaactttcctt 17222136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 28919035 - 28919111
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaac 261  Q
    |||||||| |||||||| || ||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||    
T  28919035 aaattttattatccaaaaaaaattataacaaaatgatgaaatatttagaatgacattttaagataagttattcaaac 28919111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 37668581 - 37668669
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcatt 273  Q
    ||||||||  |||||||||| |||| || |||||||| ||||| ||||||| ||||||| ||||||| ||||||||| |||||||||||    
T  37668581 aaattttatcatccaaagaaaattacaacaaaatgataaaatatttagaatgacatttttagataaactattcaaacgaaattttcatt 37668669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 9157789 - 9157852
Alignment:
Q  215 aaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaag 278  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||| |||| ||| ||||    
T  9157789 aaatgatgaaatacttagaatgaccttttaagataaattattcaaacaaattttttatttgaag 9157852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 120 - 261
Target Start/End: Complemental strand, 25318155 - 25318015
Alignment:
Q  120 atctttcaaaaatgaattttatgaaaagctattt---gaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataataaa 216  Q
    ||||||||||||||| ||||||||||||||||||   ||||||||        ||||| ||||   | ||||||||||||| ||| || ||||||| |||    
T  25318155 atctttcaaaaatgatttttatgaaaagctattttatgaaatagcttttttttagagattttt---caaaattttagtatcaaaaaaa-attataacaaa 25318060  T
Q  217 atgatgaaatacttagaataacattttaagataaattattcaaac 261  Q
    |||||| |||||||| ||| ||||||||||||||| |||||||||    
T  25318059 atgatggaatacttaaaattacattttaagataaactattcaaac 25318015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 124 - 259
Target Start/End: Original strand, 43094624 - 43094756
Alignment:
Q  124 ttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataataaaatgatga 223  Q
    ||||||||||| |||||| ||||||||||||||||||         ||||| |||| |   |||||||| |||||||| || ||||||| ||||||||||    
T  43094624 ttcaaaaatgatttttataaaaagctatttgaaatagtttatttttagagattttttta--aaattttaatatccaaaaaa-attataacaaaatgatga 43094720  T
Q  224 aatacttagaataacattttaagataaattattcaa 259  Q
    |||||| ||||| ||||||||||||||| |||||||    
T  43094721 aatactaagaatgacattttaagataaactattcaa 43094756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 36802966 - 36802919
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatag 160  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||    
T  36802966 aaatgatatctttcaaaaatgatttttatgaaaagctatttgaaatag 36802919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 8319997 - 8319947
Alignment:
Q  223 aaatacttagaataacattttaagataaattattcaaacaaaattttcatt 273  Q
    ||||||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  8319997 aaatacttagaatgacattttaagataagttattcaaacaaatttttcatt 8319947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 9157676 - 9157723
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatag 160  Q
    |||||| ||||||||||||||| ||||||||||| |||||||||||||    
T  9157676 aaatgacatctttcaaaaatgatttttatgaaaaactatttgaaatag 9157723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 45234499 - 45234546
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatag 160  Q
    |||||| |||||||||| |||| |||||||||||||||||||||||||    
T  45234499 aaatgacatctttcaaatatgatttttatgaaaagctatttgaaatag 45234546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 2355197 - 2355243
Alignment:
Q  189 tttagtatccaaagaatattataataaaatgatgaaatacttagaat 235  Q
    |||||||| |||| ||||||||| |||||||||||||||||||||||    
T  2355197 tttagtattcaaaaaatattatagtaaaatgatgaaatacttagaat 2355243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 21698833 - 21698787
Alignment:
Q  115 atgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    |||| ||||||||||||||| || |||||||||||||||||||||||    
T  21698833 atgacatctttcaaaaatgatttctatgaaaagctatttgaaatagc 21698787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 42834702 - 42834748
Alignment:
Q  237 acattttaagataaattattcaaacaaaattttcattagaagctttc 283  Q
    ||||||||||||||||||||||||| || |||||||| |||||||||    
T  42834702 acattttaagataaattattcaaacgaatttttcatttgaagctttc 42834748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 28918970 - 28919011
Alignment:
Q  120 atctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  28918970 atctttcaaaaatgattttaatgaaaagctatttgaaatagc 28919011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 8320077 - 8320037
Alignment:
Q  120 atctttcaaaaatgaattttatgaaaagctatttgaaatag 160  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  8320077 atctttcaaaaatgatttttatgaaaaactatttgaaatag 8320037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 28336985 - 28336939
Alignment:
Q  114 aatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatag 160  Q
    ||||| |||||| |||||| | |||||||||||||||||||||||||    
T  28336985 aatgacatctttgaaaaataatttttatgaaaagctatttgaaatag 28336939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 5277782 - 5277737
Alignment:
Q  215 aaatgatgaaatacttagaataacattttaagataaattattcaaa 260  Q
    ||||||||||||| ||||||| ||||||||||||||  ||||||||    
T  5277782 aaatgatgaaatagttagaatgacattttaagataagctattcaaa 5277737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 160
Target Start/End: Complemental strand, 48268844 - 48268811
Alignment:
Q  127 aaaaatgaattttatgaaaagctatttgaaatag 160  Q
    |||||||| |||||||||||||||||||||||||    
T  48268844 aaaaatgatttttatgaaaagctatttgaaatag 48268811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 29782036 - 29782000
Alignment:
Q  214 aaaatgatgaaatacttagaataacattttaagataa 250  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  29782036 aaaatgataaaatatttagaataacattttaagataa 29782000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 113 - 286
Target Start/End: Complemental strand, 39952295 - 39952126
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    |||||| ||||||||||||||| ||||||||||| ||||||||||||||        ||||| |||| ||| |||||||| |||  ||| || |||||||    
T  39952295 aaatgagatctttcaaaaatgatttttatgaaaaactatttgaaatagc-tttttttagagattttt-ttcaaaattttaatat--aaaaaaaattataa 39952200  T
Q  213 taaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
     |||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| ||| ||||||||||||    
T  39952199 caaaatgatgaaatacttagaatgacattttaagataaattattcaaataaattttttatttgaagctttcctt 39952126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 113 - 286
Target Start/End: Complemental strand, 41670252 - 41670079
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    |||||| || |||||||||||| |||||||||||||||||||||||||           |||  ||| ||| ||||||||||||||||| || |||||||    
T  41670252 aaatgacatatttcaaaaatgatttttatgaaaagctatttgaaatagtttttttttttagagattttttcaaaattttagtatccaaaaaaaattataa 41670153  T
Q  213 taaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
     |||||||||||||||||||||| ||||||||| ||||  ||||||||||||||||||||| |||  |||||||    
T  41670152 caaaatgatgaaatacttagaatgacattttaatataagctattcaaacaaaattttcatttgaaaatttcctt 41670079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 283
Target Start/End: Original strand, 41399068 - 41399239
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaa-tagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattata 211  Q
    |||||| ||||||||||||||| |||||||||||||||||||||| ||||          |||| ||| ||| ||||||||||||  ||| || ||||||    
T  41399068 aaatgacatctttcaaaaatgacttttatgaaaagctatttgaaaatagcttttttttttagaaattttttcaaaattttagtataaaaaaaaaattata 41399167  T
Q  212 ataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttc 283  Q
    |  ||||| |||||||| |||||| | ||||||||||||| |||||||||| | |||||||| |||||||||    
T  41399168 accaaatggtgaaatacctagaatgatattttaagataaactattcaaacagatttttcatttgaagctttc 41399239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 32493618 - 32493538
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||||  ||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| || ||||||||||||    
T  32493618 attataaccaaatgatgaaatacttagaatgacattttaagataaactattcaaacaaatttttcttttgaagctttcctt 32493538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 207 - 282
Target Start/End: Complemental strand, 3436480 - 3436405
Alignment:
Q  207 ttataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagcttt 282  Q
    |||||| |||||||||||||||||||||| ||||||||||||||| ||||||||  || |||||||| ||||||||    
T  3436480 ttataacaaaatgatgaaatacttagaatgacattttaagataaactattcaaatgaatttttcatttgaagcttt 3436405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 283
Target Start/End: Original strand, 6201388 - 6201485
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttc 283  Q
    ||||||||||||| ||| || |||||||| ||||||||||||||||| ||| | ||||||||||||| |||||||||  | |||||||| |||||||||    
T  6201388 aaattttagtatcaaaaaaa-attataatcaaatgatgaaatacttataatgatattttaagataaactattcaaacggatttttcatttgaagctttc 6201485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 14660677 - 14660754
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttc 283  Q
    |||||||  ||||||| ||||||||||||| ||||||||||||||| |||||||||  | |||||||| |||||||||    
T  14660677 attataaccaaatgataaaatacttagaatgacattttaagataaactattcaaaccgatttttcatttgaagctttc 14660754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 282
Target Start/End: Original strand, 42461024 - 42461120
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagcttt 282  Q
    ||||||||||||||||| |||||||||| ||||||||||||||  |||||| | ||||||||||||  |||||||||  | |||| ||| ||||||||    
T  42461024 aaattttagtatccaaa-aatattataacaaaatgatgaaatatctagaatgatattttaagataagctattcaaaccgattttttatttgaagcttt 42461120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 7634756 - 7634835
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    ||||||| |||||||||||||||||||||| |||||||||| |||  ||||||||| || ||||||||  |||||||||||    
T  7634756 attataacaaaatgatgaaatacttagaatgacattttaagttaagctattcaaacgaatttttcatt-taagctttcctt 7634835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 113 - 261
Target Start/End: Original strand, 21646995 - 21647137
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    |||||| || |||||||||||| |||||||||||||||||||||||||         | |||  ||| ||| ||||||||||||   || || |||||||    
T  21646995 aaatgatatatttcaaaaatgatttttatgaaaagctatttgaaatag-tttttcttaaaga--ttttttcaaaattttagtat---aaaaaaattataa 21647088  T
Q  213 taaaatgatgaaatacttagaataacattttaagataaattattcaaac 261  Q
     ||||||||||||||  |||||| |||||||||||||| ||||||||||    
T  21647089 caaaatgatgaaatatctagaatgacattttaagataagttattcaaac 21647137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 33891808 - 33891762
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaata 159  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||    
T  33891808 aaatgacatctttcaaaaatgatttttatgaaaagctatttgaaata 33891762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 16751304 - 16751405
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcc 284  Q
    |||||||||||| ||||  | |||||||  ||||||||||||| ||| |||  ||||||||| ||| |||||||||| || |||||||| |||| |||||    
T  16751304 aaattttagtatacaaaagaaattataaccaaatgatgaaataattataatggcattttaagttaagttattcaaacgaatttttcatttgaagatttcc 16751403  T
Q  285 tt 286  Q
    ||    
T  16751404 tt 16751405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 249
Target Start/End: Complemental strand, 5998021 - 5997897
Alignment:
Q  124 ttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataataaaatgatga 223  Q
    ||||||||||| ||||||||||||||||||||||||||          |||  ||| ||| ||| |||||||||||||   | || ||| ||||||||||    
T  5998021 ttcaaaaatgatttttatgaaaagctatttgaaatagcttttttttttagagattttttc-aaaatttagtatccaaatttttttttaacaaaatgatga 5997923  T
Q  224 aatacttagaataacattttaagata 249  Q
    |||||||||||| |||||||||||||    
T  5997922 aatacttagaatgacattttaagata 5997897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 9621044 - 9621088
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaagataa 250  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||    
T  9621044 attataataaaatgatgaaatatttagaatgacattttaagataa 9621088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 27330569 - 27330641
Alignment:
Q  214 aaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||||| ||||||||||||| ||||||||| ||||  |||||||||||| |||| ||| ||| ||||||||    
T  27330569 aaaatgataaaatacttagaatgacattttaaaataagctattcaaacaaatttttaatttgaaactttcctt 27330641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 21202485 - 21202532
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatag 160  Q
    |||||| ||||||||||||| | |||||||||||||||||||||||||    
T  21202485 aaatgacatctttcaaaaattatttttatgaaaagctatttgaaatag 21202532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 21200216 - 21200170
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaata 159  Q
    |||||| ||||||||||||| | ||||||||||||||||||||||||    
T  21200216 aaatgacatctttcaaaaattatttttatgaaaagctatttgaaata 21200170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 32493709 - 32493663
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaata 159  Q
    |||||| |||||| |||||||| ||||||||||||||||||||||||    
T  32493709 aaatgacatcttttaaaaatgatttttatgaaaagctatttgaaata 32493663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 7634665 - 7634705
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctattt 153  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  7634665 aaatgacatctttcaaaaatgatttttatgaaaagctattt 7634705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 27330471 - 27330519
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    |||||| |||||| |||||||| ||||||| ||||||||||||||||||    
T  27330471 aaatgacatcttttaaaaatgatttttatggaaagctatttgaaatagc 27330519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 3436558 - 3436512
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaata 159  Q
    |||||| ||||||||||||||| ||||||||||| ||||||| ||||    
T  3436558 aaatgacatctttcaaaaatgatttttatgaaaaactatttggaata 3436512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 153
Target Start/End: Original strand, 16751251 - 16751285
Alignment:
Q  119 aatctttcaaaaatgaattttatgaaaagctattt 153  Q
    |||||||||||||||| ||||||||||||||||||    
T  16751251 aatctttcaaaaatgatttttatgaaaagctattt 16751285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 28176365 - 28176410
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaagataaa 251  Q
    |||||||| ||||||| ||||||||||||| || ||||||||||||    
T  28176365 attataatcaaatgataaaatacttagaatgactttttaagataaa 28176410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 14660399 - 14660443
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaa 157  Q
    |||||| |||||| |||||||| ||||||| ||||||||||||||    
T  14660399 aaatgatatcttttaaaaatgatttttatggaaagctatttgaaa 14660443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 123 - 286
Target Start/End: Original strand, 394290 - 394451
Alignment:
Q  123 tttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnn-agagaattttgttcgaaattttagtatccaaagaatattataataaaatgat 221  Q
    |||||||||||| ||||||||||||||||||||||||||         ||||| ||||  || |||||| |||||||||| || ||||||| ||||||||    
T  394290 tttcaaaaatgatttttatgaaaagctatttgaaatagctttttttttagagattttt--tcaaaattt-agtatccaaaaaaaattataacaaaatgat 394386  T
Q  222 gaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||||||||||| ||||||||||||||  |||||||||| | |||||||| ||||||||||||    
T  394387 gaaatacttagaatgacattttaagataagctattcaaacagatttttcatttgaagctttcctt 394451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 113 - 286
Target Start/End: Complemental strand, 5841493 - 5841318
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnn---agagaattttgttcgaaattttagtatccaaagaatatta 209  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||           ||||| |||| ||| |||||||||||||||||  |  |||    
T  5841493 aaatgacatctttcaaaaatgatttttatgaaaagctatttgaaatagctttttttttttagagattttt-ttcaaaattttagtatccaaaataattta 5841395  T
Q  210 taataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||  ||||||||||||||||||||| | ||| ||||||||| |||||||||| | |||||||| ||||||||||||    
T  5841394 taaccaaatgatgaaatacttagaatgatattctaagataaactattcaaacatatttttcatttgaagctttcctt 5841318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 113 - 285
Target Start/End: Original strand, 7861300 - 7861469
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    |||||| || |||||||||||| |||||||||||||||||||||||||         ||||| ||||  || |||||| |||||| ||| || |||||||    
T  7861300 aaatgatatttttcaaaaatgatttttatgaaaagctatttgaaatagtttttttttagagattttt--tcaaaattt-agtatctaaaaaaaattataa 7861396  T
Q  213 taaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcct 285  Q
     ||| |||||||||||||||||| ||||||||||||||| ||||||||  || |||||||| ||| |||||||    
T  7861397 caaactgatgaaatacttagaatgacattttaagataaactattcaaatgaatttttcatttgaaactttcct 7861469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 113 - 283
Target Start/End: Complemental strand, 42522293 - 42522125
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagc-annnnnnnagagaattttgttcgaaattttagtatccaaagaatattata 211  Q
    |||||| || |||||||||||| |||||||||||||||||||||||||  |       ||||| ||||  || ||||||| |||| | || || ||||||    
T  42522293 aaatgacatttttcaaaaatgatttttatgaaaagctatttgaaatagttatttttttagagattttt--tcaaaatttt-gtattccaaaaaaattata 42522197  T
Q  212 ataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttc 283  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||||||| || |||||||| || ||||||    
T  42522196 ataaaatgatgaaatacttagaatgacattttaagataagctattcaaacgaatttttcatttgatgctttc 42522125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 189 - 286
Target Start/End: Original strand, 10378801 - 10378898
Alignment:
Q  189 tttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    ||||||||||||| ||  |||||| |||| ||||||||||||||||| ||||||||||||||| |||||||||| | ||||| || ||||||||||||    
T  10378801 tttagtatccaaaaaaatttataacaaaacgatgaaatacttagaatgacattttaagataaactattcaaacagatttttcgtttgaagctttcctt 10378898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 15834845 - 15834945
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcc 284  Q
    ||||||||||||||||| || ||||||| |||||||| |||||  |||||| ||||||||||||||| ||||||||| || |||| ||| ||||||||||    
T  15834845 aaattttagtatccaaaaaa-attataacaaaatgataaaatatctagaatgacattttaagataaactattcaaaccaattttttatttgaagctttcc 15834943  T
Q  285 tt 286  Q
    ||    
T  15834944 tt 15834945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 113 - 283
Target Start/End: Complemental strand, 865772 - 865606
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    |||||| ||||||||||||| | ||||||||||| |||||||||||||         |||||  ||| ||| |||||||||||   ||| || |||||||    
T  865772 aaatgacatctttcaaaaataatttttatgaaaaactatttgaaatagtttttttttagagatattt-ttcaaaattttagta---aaaaaaaattataa 865677  T
Q  213 taaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttc 283  Q
      ||||||| ||||||||||||| ||||||||||||||||||||| || | | |||||||| ||| |||||    
T  865676 ccaaatgataaaatacttagaatgacattttaagataaattattccaagagatttttcatttgaaactttc 865606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 36080743 - 36080597
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    |||||| |||||| |||||||| |||||||||||||||||||||||  |        ||  |||||| ||| |||||||||||| |||| || |||||||    
T  36080743 aaatgacatctttaaaaaatgatttttatgaaaagctatttgaaatgacttttttctagc-aatttt-ttcaaaattttagtattcaaaaaaaattataa 36080646  T
Q  213 taaaatgatgaaatacttagaataacattttaagataaattattcaaac 261  Q
     |||||||||||||||||||||  | ||||||||||||  |||||||||    
T  36080645 caaaatgatgaaatacttagaacgatattttaagataagctattcaaac 36080597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 113 - 286
Target Start/End: Complemental strand, 36977583 - 36977411
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagaga-attttgttcgaaattttagtatccaaagaatattata 211  Q
    |||||| ||||||||||||||| ||||| ||||| ||||||||||||||           || ||||| ||| ||||||||||||  ||| || ||||||    
T  36977583 aaatgacatctttcaaaaatgatttttaagaaaaactatttgaaatagcttttttgttttgagatttttttcaaaattttagtat--aaaaaaaattata 36977486  T
Q  212 ataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
       ||||||||||||||||| ||| ||||||||| ||||| |||||||||| | |||||||| |||| |||||||    
T  36977485 gccaaatgatgaaatacttaaaatgacattttaaaataaactattcaaacatatttttcatttgaagttttcctt 36977411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 113 - 283
Target Start/End: Original strand, 9771758 - 9771925
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatag-cannnnnnnagagaattttgttcgaaattttagtatccaaagaatattata 211  Q
    |||||| |||||||||| |||| |||||||||||||||||||||||||          |||||  ||| ||| ||||||||||||  ||| || ||||||    
T  9771758 aaatgacatctttcaaagatgatttttatgaaaagctatttgaaatagttttttttttagaga--ttttttcaaaattttagtat--aaaaaaaattata 9771853  T
Q  212 ataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttc 283  Q
    |   |||||||||||||||| ||||| ||||||||||||| |||||||||  | |||||||| ||| |||||    
T  9771854 acccaatgatgaaatacttataataagattttaagataaactattcaaacggatttttcatttgaaactttc 9771925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 13146235 - 13146158
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttc 283  Q
    |||||||  ||||||||||||| ||||||| ||||||||||||||| |||||||||  | |||| ||| |||||||||    
T  13146235 attataagcaaatgatgaaatatttagaatgacattttaagataaactattcaaacggattttttatttgaagctttc 13146158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 2068464 - 2068424
Alignment:
Q  120 atctttcaaaaatgaattttatgaaaagctatttgaaatag 160  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  2068464 atctttcaaaaatgatttttatgaaaagctatttgaaatag 2068424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 32270430 - 32270494
Alignment:
Q  214 aaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaag 278  Q
    |||||||||||||||||| |||  |||||||||||||  |||||||||||| |||||||| ||||    
T  32270430 aaaatgatgaaatacttaaaatgtcattttaagataagatattcaaacaaatttttcatttgaag 32270494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 6812739 - 6812692
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatag 160  Q
    |||||| || |||||||||||| |||||||||||||||||||||||||    
T  6812739 aaatgatatatttcaaaaatgatttttatgaaaagctatttgaaatag 6812692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 286
Target Start/End: Complemental strand, 35286185 - 35286012
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnn--agagaattttgttcgaaattttagtatccaaagaatattat 210  Q
    |||||| || |||||||||||| |||||||||||||||||||||||| |          ||||| |||| ||  ||||||||||||  ||| || |||||    
T  35286185 aaatgacatatttcaaaaatgatttttatgaaaagctatttgaaataactttttcttttagagattttttttttaaattttagtataaaaaaaa-attat 35286087  T
Q  211 aataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    ||  || |||||||||| ||||||| | ||||||||| ||| |||||||||| | |||||||| |||| |||||||    
T  35286086 aaccaa-tgatgaaatatttagaatgatattttaagagaaactattcaaacagatttttcatttgaagttttcctt 35286012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 284
Target Start/End: Original strand, 25825070 - 25825148
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcc 284  Q
    ||||||| ||||||||||||||   ||||| ||||||||||||||  ||||||||| || |||| ||| ||||||||||    
T  25825070 attataacaaaatgatgaaatatcgagaatcacattttaagataagctattcaaaccaattttttatttgaagctttcc 25825148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 32270343 - 32270389
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaata 159  Q
    |||||| ||||||||||||| | ||||||||||||||||||||||||    
T  32270343 aaatgacatctttcaaaaataatttttatgaaaagctatttgaaata 32270389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 12220286 - 12220208
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||||  ||||||||||||||||||||| | ||||||||||||| |||| ||||  | |||||||| |||| |||||||    
T  12220286 attataaccaaatgatgaaatacttagaatgatattttaagataaactatttaaac--atttttcatttgaagttttcctt 12220208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 43583574 - 43583509
Alignment:
Q  208 tataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcatt 273  Q
    ||||| ||||||||||||||||||||   ||||||| |||||| |||||||||| || ||||||||    
T  43583574 tataacaaaatgatgaaatacttagagagacatttttagataagttattcaaacgaatttttcatt 43583509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 15936946 - 15936994
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    |||||| || |||||||||||| ||||||| ||||||||||||||||||    
T  15936946 aaatgacatttttcaaaaatgatttttatgcaaagctatttgaaatagc 15936994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 25824979 - 25825027
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    |||||| || |||||||||||| ||||||||||| ||||||||||||||    
T  25824979 aaatgatatatttcaaaaatgatttttatgaaaaactatttgaaatagc 25825027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 10192760 - 10192714
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaata 159  Q
    |||||| ||||||||||||| | |||||||||||||||||| |||||    
T  10192760 aaatgacatctttcaaaaataatttttatgaaaagctattttaaata 10192714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 26244398 - 26244444
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaata 159  Q
    |||||| ||||||||||||| | |||||| |||||||||||||||||    
T  26244398 aaatgacatctttcaaaaataatttttataaaaagctatttgaaata 26244444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 10378745 - 10378778
Alignment:
Q  128 aaaatgaattttatgaaaagctatttgaaatagc 161  Q
    ||||||| ||||||||||||||||||||||||||    
T  10378745 aaaatgacttttatgaaaagctatttgaaatagc 10378778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 113 - 286
Target Start/End: Complemental strand, 50679994 - 50679823
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    |||||| ||||||||||||| | ||||||||||||||||||||||||||        | |||  ||| ||| ||||||||||||  ||| || |||||||    
T  50679994 aaatgacatctttcaaaaataatttttatgaaaagctatttgaaatagctttttttta-agagattttttcaaaattttagtataaaaaaaa-attataa 50679897  T
Q  213 taaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
      ||||||||||||||||||||| | ||||||||||||| |||||||||||| |||||||| ||||||||||||    
T  50679896 ccaaatgatgaaatacttagaatgatattttaagataaactattcaaacaaatttttcatttgaagctttcctt 50679823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 206 - 284
Target Start/End: Original strand, 32156536 - 32156614
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcc 284  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  32156536 attataataaaatgatgaaatacttataattacattttaagataaattatacaaacaaaattttcattcgaaactttcc 32156614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 282
Target Start/End: Original strand, 9686541 - 9686638
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagcttt 282  Q
    ||||||||||||  ||| || ||||||| |||||||| ||||||||||||| ||||||||||||||| |||||||||| | |||||||| ||| ||||    
T  9686541 aaattttagtataaaaaaaaaattataacaaaatgataaaatacttagaattacattttaagataaaatattcaaacatatttttcattcgaaacttt 9686638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 25142258 - 25142336
Alignment:
Q  208 tataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    ||||| |||||||||||||||||||||| ||||||||| |||| |||||||||| || |||||||| |||| |||||||    
T  25142258 tataacaaaatgatgaaatacttagaatgacattttaaaataagttattcaaacgaatttttcatttgaagttttcctt 25142336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 113 - 286
Target Start/End: Original strand, 42746648 - 42746818
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    |||||| ||||| ||||||||| ||||||||||||||||||||||||||          ||   ||| ||| ||||||||||||  ||| |||||||  |    
T  42746648 aaatgacatcttccaaaaatgatttttatgaaaagctatttgaaatagctttttcttgtagggattttttcaaaattttagtataaaaa-aatatta--a 42746744  T
Q  213 taaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
     |||||||||||||||||||||| | |||||||||||| |||||||||| ||||||| | | ||| ||||||||    
T  42746745 caaaatgatgaaatacttagaattatattttaagataagttattcaaacgaaatttttagttgaaactttcctt 42746818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 24970043 - 24970123
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||||  ||||||||||||||||||||| |||||||||| |||  |||||||||||| |||||||| ||| ||||||||    
T  24970043 attataaccaaatgatgaaatacttagaatgacattttaagttaagctattcaaacaaatttttcatttgaaactttcctt 24970123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 51717705 - 51717776
Alignment:
Q  189 tttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaa 260  Q
    |||| |||||||| || ||||||| |||||||||||||||||||||| ||||||||||||||  ||||||||    
T  51717705 tttaatatccaaaaaaaattataacaaaatgatgaaatacttagaatgacattttaagataagatattcaaa 51717776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 24234878 - 24234940
Alignment:
Q  211 aataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcatt 273  Q
    ||||||||||||||||||||| ||| |||||||||||||| |||||||||| || ||||||||    
T  24234878 aataaaatgatgaaatacttaaaatgacattttaagataagttattcaaacgaatttttcatt 24234940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 35321535 - 35321634
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcc 284  Q
    ||||||||||||  ||| || |||||||  ||||||||||||| ||||||| ||||||||| ||||| |||||||||| | |||||||| ||| ||||||    
T  35321535 aaattttagtat--aaaaaaaattataaccaaatgatgaaatatttagaatgacattttaatataaactattcaaacagatttttcatttgaaactttcc 35321632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 19300205 - 19300283
Alignment:
Q  207 ttataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcct 285  Q
    |||||| ||||| || ||||||||||||| | |||||||||||||||||||||||  | |||||||| |||| ||||||    
T  19300205 ttataacaaaatcataaaatacttagaatgagattttaagataaattattcaaaccgatttttcatttgaagttttcct 19300283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 49491981 - 49491935
Alignment:
Q  115 atgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  49491981 atgacatctttcaaaaatgatttttatgaaaagctatttgaaatagc 49491935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 16304418 - 16304466
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    |||||| ||||||||||||||| ||||||||||| ||||||||||||||    
T  16304418 aaatgacatctttcaaaaatgatttttatgaaaaactatttgaaatagc 16304466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 49491891 - 49491827
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttc 270  Q
    ||||||| |||||||||| ||| ||||||| |||||||| |||||  ||||||||||||||||||    
T  49491891 attataacaaaatgatgagatatttagaatgacattttacgataagctattcaaacaaaattttc 49491827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 49402455 - 49402502
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatag 160  Q
    |||||| ||||||||||||||| |||||||||| ||||||||||||||    
T  49402455 aaatgacatctttcaaaaatgatttttatgaaaggctatttgaaatag 49402502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 16476428 - 16476387
Alignment:
Q  120 atctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  16476428 atctttcaaaaatgatttttttgaaaagctatttgaaatagc 16476387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 180551 - 180479
Alignment:
Q  214 aaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||||||||||||||||||  | ||||||||||||  || |||||| || |||||||| |||| |||||||    
T  180551 aaaatgatgaaatacttagaacgatattttaagataaggtactcaaacgaatttttcatttgaagttttcctt 180479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 25142186 - 25142233
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatag 160  Q
    |||||| |||||| |||||||| |||||||||||| ||||||||||||    
T  25142186 aaatgacatcttttaaaaatgatttttatgaaaagttatttgaaatag 25142233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 37874633 - 37874586
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttag 232  Q
    ||||||||||||||||| || |||||||  ||||||||||||||||||    
T  37874633 aaattttagtatccaaaaaaaattataactaaatgatgaaatacttag 37874586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 51717632 - 51717677
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaat 158  Q
    |||||| || |||||||||||| |||||||||||| ||||||||||    
T  51717632 aaatgacatttttcaaaaatgatttttatgaaaagttatttgaaat 51717677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 599622 - 599586
Alignment:
Q  123 tttcaaaaatgaattttatgaaaagctatttgaaata 159  Q
    ||||||||||||||||||||||||| | |||||||||    
T  599622 tttcaaaaatgaattttatgaaaagttttttgaaata 599586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 42890225 - 42890150
Alignment:
Q  189 tttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaa 265  Q
    ||||||||||||| || | ||| | |||||| |||  |||||||||| ||||| ||||||||| |||||||||||||    
T  42890225 tttagtatccaaaaaaaagtatcacaaaatgctgag-tacttagaattacattataagataaactattcaaacaaaa 42890150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 172 - 286
Target Start/End: Complemental strand, 12880410 - 12880296
Alignment:
Q  172 agaattttgttcgaaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttca 271  Q
    |||| ||| ||| |||||||| |||||||| || ||||||| |||||||||| |||||||||||  ||||||||||||||||||||||||||| ||||||    
T  12880410 agaaattttttcaaaattttaatatccaaaaaaaattataacaaaatgatgagatacttagaattgcattttaagataaattattcaaacaaatttttca 12880311  T
Q  272 ttagaagctttcctt 286  Q
    || ||| ||||||||    
T  12880310 tttgaaactttcctt 12880296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 12628710 - 12628811
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcc 284  Q
    |||| |||||||||||| || ||||||| |||||||||||||||||| ||| ||||||||||||||| |||||||||||| ||||||||  || ||||||    
T  12628710 aaatcttagtatccaaaaaaaattataacaaaatgatgaaatacttaaaattacattttaagataaactattcaaacaaatttttcatttaaaactttcc 12628809  T
Q  285 tt 286  Q
    ||    
T  12628810 tt 12628811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 120 - 286
Target Start/End: Complemental strand, 25892054 - 25891884
Alignment:
Q  120 atctttcaaaaatgaattttatgaaaagctatttgaaatagc---annnnnnnagagaattttgttcgaaattttagtatccaaaga-atattataataa 215  Q
    ||||||||||||||| |||||||||||||||||||||||| |             |||| ||| ||| ||||||||||||||||| |  | |||||| ||    
T  25892054 atctttcaaaaatgatttttatgaaaagctatttgaaatacccttttttttttttagaaattttttcaaaattttagtatccaaaaattttttataacaa 25891955  T
Q  216 aatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||| ||||||||||||| ||||||||||||||| |||||||||| | |||| ||||||| ||||||||    
T  25891954 aatgattaaatacttagaattacattttaagataaactattcaaacagattttttattagaaactttcctt 25891884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 46284193 - 46284126
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcatt 273  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||    
T  46284193 attataataaaatgatgaaatatttagaataacattttaaaataaattatttaaacaaatttttcatt 46284126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 185 - 283
Target Start/End: Complemental strand, 29152894 - 29152797
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttc 283  Q
    ||||||||||||||||| || ||||||| ||||||||||||||||   ||| |||||||||| |||| ||||||||| ||||||||||| |||||||||    
T  29152894 aaattttagtatccaaaaaa-attataacaaaatgatgaaatactagaaatgacattttaagttaaactattcaaacgaaattttcatttgaagctttc 29152797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 6492467 - 6492375
Alignment:
Q  193 gtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    ||||||||| || ||||||| ||||||||||||||| || ||| |||||||||||||| ||||||||||||| ||||||||  |||||||||||    
T  6492467 gtatccaaaaaa-attataacaaaatgatgaaatacataaaatgacattttaagataatttattcaaacaaatttttcattttaagctttcctt 6492375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 15802063 - 15802143
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||  |||||||||  | ||||| || ||||||||||||    
T  15802063 attataacaaaatgatgaaatacttagaatgacattttaagataagctattcaaacggatttttcgtttgaagctttcctt 15802143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 51161881 - 51161801
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||||| ||||||||||||||||||||| |||||||||||| || |||||||||  | |||||||| ||| ||||||||    
T  51161881 attataatcaaatgatgaaatacttagaatgacattttaagatcaactattcaaactgatttttcatttgaaactttcctt 51161801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 189 - 286
Target Start/End: Original strand, 10891454 - 10891552
Alignment:
Q  189 tttagtatccaaagaata-ttataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    ||||||||||||| || | ||||||  ||||||||||||||||||||| ||||||||||||||| | ||| |||  | |||||||| ||||||||||||    
T  10891454 tttagtatccaaaaaaaaattataaccaaatgatgaaatacttagaatgacattttaagataaacttttctaacggatttttcatttgaagctttcctt 10891552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 36700069 - 36700170
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcc 284  Q
    ||||||||||||| ||| |  |||||||  ||||||||||||||||||||| ||||||||||||||| |||| ||||  | |||||||| |||  |||||    
T  36700069 aaattttagtatctaaaaataattataaccaaatgatgaaatacttagaatgacattttaagataaactatttaaacggatttttcatttgaatttttcc 36700168  T
Q  285 tt 286  Q
    ||    
T  36700169 tt 36700170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 36716173 - 36716274
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcc 284  Q
    ||||||||||||| ||| |  |||||||  ||||||||||||||||||||| ||||||||||||||| |||| ||||  | |||||||| |||  |||||    
T  36716173 aaattttagtatctaaaaataattataaccaaatgatgaaatacttagaatgacattttaagataaactatttaaacggatttttcatttgaatttttcc 36716272  T
Q  285 tt 286  Q
    ||    
T  36716273 tt 36716274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 41812071 - 41811999
Alignment:
Q  214 aaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||   | |||||||| ||| ||||||||    
T  41812071 aaaatgatgaaatacttagaatgacattttaagataagttattcaaatggatttttcatttgaaactttcctt 41811999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 33015289 - 33015344
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaagataaattattcaaac 261  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| || |||||||    
T  33015289 attataacaaaatgatgaaatacttagaatgacattttaagataagttgttcaaac 33015344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 52042759 - 52042705
Alignment:
Q  206 attataataaaatgatgaaatacttagaataacattttaagataaattattcaaa 260  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||| |||||||||    
T  52042759 attataacaaaatgatgaaatgcttagaatgacattttaagataagttattcaaa 52042705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 13573217 - 13573317
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcc 284  Q
    ||||||||||||  |||||| |||| ||| ||||  ||||||||||||||| ||||||||||| ||| | |||||||  | |||||||| |||| |||||    
T  13573217 aaattttagtataaaaagaa-attacaatcaaattttgaaatacttagaatgacattttaagacaaacttttcaaacggatttttcatttgaagatttcc 13573315  T
Q  285 tt 286  Q
    ||    
T  13573316 tt 13573317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 6492549 - 6492501
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    |||||| |||||||| |||||| ||||||||||||||| ||||||||||    
T  6492549 aaatgacatctttcataaatgatttttatgaaaagctaattgaaatagc 6492501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 11830806 - 11830742
Alignment:
Q  222 gaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||| ||||||| ||||||||| |||| ||||||||| ||| |||| ||| ||||||||||||    
T  11830806 gaaataattagaatgacattttaaaataagttattcaaataaattttttatttgaagctttcctt 11830742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 23027064 - 23027016
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    |||||| || ||| |||||||| ||||||||||||||||||||||||||    
T  23027064 aaatgacatattttaaaaatgatttttatgaaaagctatttgaaatagc 23027016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 41812169 - 41812121
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    ||||||||| |||||||||||| |||||| ||||||||||| |||||||    
T  41812169 aaatgaaatttttcaaaaatgatttttattaaaagctatttcaaatagc 41812121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 43413509 - 43413461
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    |||||| ||||||||||||||| |||||||| || ||||||||||||||    
T  43413509 aaatgacatctttcaaaaatgatttttatgataaactatttgaaatagc 43413461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 34898918 - 34898875
Alignment:
Q  117 gaaatctttcaaaaatgaattttatgaaaagctatttgaaatag 160  Q
    ||||||||| |||||| | |||||||||||||||||||||||||    
T  34898918 gaaatcttttaaaaataatttttatgaaaagctatttgaaatag 34898875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 10891399 - 10891437
Alignment:
Q  123 tttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  10891399 tttcaaaaatgatttttatgaaaaactatttgaaatagc 10891437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 5720162 - 5720123
Alignment:
Q  120 atctttcaaaaatgaattttatgaaaagctatttgaaatag 160  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  5720162 atctttcaaaaatgatttttatg-aaagctatttgaaatag 5720123  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 33015196 - 33015244
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagc 161  Q
    |||||| || || ||||||||| |||||||||||| |||||||||||||    
T  33015196 aaatgacattttccaaaaatgatttttatgaaaagttatttgaaatagc 33015244  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 52019736 - 52019677
Alignment:
Q  214 aaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcatta 274  Q
    |||||||||||||| |||||||||  |||||||| || || ||||||| ||||||||||||    
T  52019736 aaaatgatgaaatagttagaataatgttttaagagaagttgttcaaac-aaattttcatta 52019677  T

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Target: scaffold0027 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 113 - 286
Target Start/End: Complemental strand, 116831 - 116659
Alignment:
Q  113 aaatgaaatctttcaaaaatgaattttatgaaaagctatttgaaatagcannnnnnnagagaattttgttcgaaattttagtatccaaagaatattataa 212  Q
    |||||| || ||| |||||||| |||||| |||||||||||||||||||        |||||||||| ||| |||||||||||| |||| || |||||||    
T  116831 aaatgacattttttaaaaatgatttttataaaaagctatttgaaatagcttttttttagagaatttt-ttcaaaattttagtattcaaaaaaaattataa 116733  T
Q  213 taaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
     ||||||||||||||||||  || | ||||||||||||| ||||||||   | |||||||| ||||||||||||    
T  116732 caaaatgatgaaatacttaagatgatattttaagataaactattcaaaaggatttttcatttgaagctttcctt 116659  T

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Target: scaffold1505 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1505
Description:

Target: scaffold1505; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 865 - 937
Alignment:
Q  214 aaaatgatgaaatacttagaataacattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||||||||||  ||||||| |||||||||||||| ||||||||||||| |||||||| ||| ||||||||    
T  865 aaaatgatgaaatttttagaattacattttaagataagttattcaaacaaatttttcatttgaaactttcctt 937  T

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Target: scaffold0024 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 42204 - 42280
Alignment:
Q  185 aaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaaca 262  Q
    |||||| |||||| ||| ||| ||||||  ||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  42204 aaatttgagtatcaaaaaaat-ttataaccaaatgatgaaatacttagaatgacattttaagataaactattcaaaca 42280  T

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Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 160948 - 161033
Alignment:
Q  175 attttgttcgaaattttagtatccaaagaatattataataaaatgatgaaatacttagaataacattttaagataaattattcaaac 261  Q
    ||||| ||| ||||||||||||  |||||| |||| ||| |||| |||||||||||||||| | ||||||||| ||| |||||||||    
T  160948 atttttttcaaaattttagtataaaaagaa-attacaatcaaattatgaaatacttagaatgatattttaagacaaactattcaaac 161033  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 183820 - 183771
Alignment:
Q  237 acattttaagataaattattcaaacaaaattttcattagaagctttcctt 286  Q
    |||||||||||||||||||||||||  | |||||||| ||| ||||||||    
T  183820 acattttaagataaattattcaaacggatttttcatttgaaactttcctt 183771  T

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Target: scaffold0070 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 30101 - 30145
Alignment:
Q  214 aaaatgatgaaatacttagaataacattttaagataaattattca 258  Q
    |||||||||||||  ||||||| ||||||||||||||||| ||||    
T  30101 aaaatgatgaaatttttagaattacattttaagataaatttttca 30145  T

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