View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_low_12 (Length: 568)
Name: NF11768_low_12
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_12 |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 40 - 512
Target Start/End: Complemental strand, 13844841 - 13844375
Alignment:
| Q |
40 |
ttgttttttcagatacatacatgccccctttgcataaattattttcctgattcttttgatgactggtcgttgatattcttccaagtttgattgcatgcac |
139 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13844841 |
ttgtttttttagatgcatacatgccccctttgcataaattattttcctgattcttttgatgactggtcgttgatattcttccaagtttgattgcatgcat |
13844742 |
T |
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| Q |
140 |
aaattgatcaaagaatattaatcattaatatgaggcgtggaaagtat--gagtcattttttatttagacaccaagagaccagattctcacggacttgtat |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13844741 |
aaattgatcaaagaatattaatcattaatatgaggcgtggaaagtatgagagtcattttttatttagacaccaagagaccagattctcacggacttgtat |
13844642 |
T |
|
| Q |
238 |
ctactaacaataacaatatataaaaattgtactcttaacaaatttttataattgtcctttttaaaactaatgattactttaactttatatgctaatgatc |
337 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
13844641 |
ctactaacaataacaatatataaaaattgtac---taacaaaattttataattgtccttttttaaactaatgattactttaactttatgtgctaatgatc |
13844545 |
T |
|
| Q |
338 |
attttgtaaaatataaaacaaaannnnnnncccacttttttcttcttattatccaatttccttgaatattagtaactcttcactacttcttgcggatgga |
437 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13844544 |
attttgtaaaatataaaac-caatttttttcccacttttttcttcttattatccaatttctttgaatattagtaactcttcactacttcttgcggatgga |
13844446 |
T |
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| Q |
438 |
agtttattactcgttcaaaggttatcttctttttcaatctaagtatatgtagtacaaacattcttaaacaaactc |
512 |
Q |
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| T |
13844445 |
agtttattactcgttcaaaggttatcttctttttcaatctaagtatat----tacgaacattcttaaacaaactc |
13844375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 80 - 225
Target Start/End: Complemental strand, 13852645 - 13852487
Alignment:
| Q |
80 |
attttcctgattcttttgatgactggtcgttgatatt----cttccaagtttgattgcatgcacaaattgatcaaagaatattaat-------cattaat |
168 |
Q |
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|||||| |||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| | |||| |
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| T |
13852645 |
attttcatgattcttttgatgactggtcggtgatatttattcttccaagtctgattgcatgcacaaattgatcaaagaatattaattaacaactaataat |
13852546 |
T |
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| Q |
169 |
atgaggcgtggaaagtatgag--tcattttttatttagacaccaagagaccagattctc |
225 |
Q |
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|||| ||||||||||||||| || |||||| |||||||| |||||||||||||||| |
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| T |
13852545 |
ttgagacgtggaaagtatgagattcggtttttagttagacacgaagagaccagattctc |
13852487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 530 - 558
Target Start/End: Complemental strand, 13844362 - 13844334
Alignment:
| Q |
530 |
ataccaaatcaagagatatgttccctttg |
558 |
Q |
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| T |
13844362 |
ataccaaatcaagagatatgttccctttg |
13844334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 26243432 - 26243386
Alignment:
| Q |
256 |
tataaaaattgtactcttaacaaatttttataattgtcctttttaaaa |
303 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
26243432 |
tataaaaattgtactct-aacaaattttcataattgtcctttttaaaa |
26243386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 299
Target Start/End: Complemental strand, 26121249 - 26121207
Alignment:
| Q |
256 |
tataaaaattgtactcttaacaaatttttataattgtccttttt |
299 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
26121249 |
tataaaaattgtactct-aacaaattttcataattgtccttttt |
26121207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 43473205 - 43473151
Alignment:
| Q |
248 |
taacaatatataaaaattgtactcttaacaaatttttataattgtcctttttaaaa |
303 |
Q |
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||||||||||||||||| |||||| | |||| ||||||||||||||||||||||| |
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| T |
43473205 |
taacaatatataaaaatcgtactcc-agcaaaattttataattgtcctttttaaaa |
43473151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 21629 - 21729
Alignment:
| Q |
254 |
tatataaaaattgtactcttaacaaatttttataattgtcctttttaaaactaatgattactttaactttatatgc-taatgatcattttgtaaaatata |
352 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| | ||||| |||| || |||| ||||| ||| ||||||| ||||| |||||||| |
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| T |
21629 |
tatataaaaattgtactac-aacaaatttttataattgtcctttcttaaactcatgaccaccttaattttatgtgcttaatgataatttt-caaaatata |
21726 |
T |
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| Q |
353 |
aaa |
355 |
Q |
| |
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||| |
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| T |
21727 |
aaa |
21729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 349
Target Start/End: Complemental strand, 22497342 - 22497241
Alignment:
| Q |
248 |
taacaatatataaaaattgtactcttaacaaatttttataattgtcctttttaaaactaatgattactttaactttatatgc-taatgatcattttgtaa |
346 |
Q |
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||||||||||||||||||| | | |||||| |||||||||||||||| |||||||| ||||| |||||| ||||| ||| ||||| ||| |||| || |
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| T |
22497342 |
taacaatatataaaaattgaagtac-aacaaaattttataattgtccttattaaaactcatgatctctttaattttatgtgcataatggtcaatttgcaa |
22497244 |
T |
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| Q |
347 |
aat |
349 |
Q |
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||| |
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| T |
22497243 |
aat |
22497241 |
T |
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