View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_low_19 (Length: 498)
Name: NF11768_low_19
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_19 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: scaffold0021 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 19 - 485
Target Start/End: Original strand, 152229 - 152695
Alignment:
| Q |
19 |
aatgagccttatgcagatattatccaaaagttttttcacttgttggcaatttgccatacagccataccagaagtggatgatgatgcaggaaatgtatctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
152229 |
aatgagccttatgcagatattatccaaaagttttttcacttgttggcaatttgccatacagccataccagaagtggatgatgatgcaggaaatgtatctt |
152328 |
T |
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| Q |
119 |
acgaagccgaatctcctgatgaagcagcatttgtaattgctgcgagagaaattggttttgaattctataaaagaactcaaactagtttatcaatgtatga |
218 |
Q |
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| T |
152329 |
acgaagccgaatctcctgatgaagcagcatttgtaattactgcgagagaaattggttttgaattctataaaagaactcaaactagtttatcaatgtatga |
152428 |
T |
|
| Q |
219 |
attggatccagtttctggtgaaaaagttgaaaggtcggttccgtaaaaaatttcttgtaagttttagtaactaaaaatttgactgtttcatttctctgtg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
152429 |
attggatccagtttctggtgaaaaagttgaaaggtcggttccgtaaaaaatttcttgtaagttttagtaactaaaaatttgactgtttcatttctctgtg |
152528 |
T |
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| Q |
319 |
ctagtcaactatatatgttttaggctgaatttgtcttcagaaaaacaagaactattgcatgctaagttgtctcgggcaagaaacctgttagttttcaata |
418 |
Q |
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| T |
152529 |
ctagtcaactatatatgttttaggctgaatttgtcttcagaaaaacaagaactattgcatgctaagttgtctcgggcaagaaacctgttagttttcaata |
152628 |
T |
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| Q |
419 |
aaatgtgcttgtaagttgtaacttgtacatcttcttctggtctagccgatagcttatagctgcacct |
485 |
Q |
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| T |
152629 |
aaatgtgcttgtaagttgtaacttgtacatcttcttctggtctagccgatagcttatagctgcacct |
152695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 29590513 - 29590279
Alignment:
| Q |
19 |
aatgagccttatgcagatattatccaaaagttttttcacttgttggcaatttgccatacagccataccagaagtggatgatgatgcaggaaatgtatctt |
118 |
Q |
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||||| ||| |||||||| ||||||| |||||||||| | ||||| | || |||||||||||||||||| | ||| | || |||||||||| || | |
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| T |
29590513 |
aatgaacctcatgcagatgttatccagaagttttttcgtctattggccgtatgtcatacagccataccagaaatagatcaagagacaggaaatgtctcct |
29590414 |
T |
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| Q |
119 |
acgaagccgaatctcctgatgaagcagcatttgtaattgctgcgagagaaattggttttgaattctataaaagaactcaaactagtttatcaatgtatga |
218 |
Q |
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|||| || |||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||| |||| || |||||||| | | ||| |
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| T |
29590413 |
acgaggctgaatctccggatgaagctgcatttgttattgcggcgagagaaattggttttgaattcttcaaaagggctcagaccagtttatcgacatgtga |
29590314 |
T |
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| Q |
219 |
attggatccagtttctggtgaaaaagttgaaaggt |
253 |
Q |
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| T |
29590313 |
gttggatccagtttcaggcaagaaagttgaaaggt |
29590279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 13707482 - 13707705
Alignment:
| Q |
30 |
tgcagatattatccaaaagttttttcacttgttggcaatttgccatacagccataccagaagtggatgatgatgcaggaaatgtatcttacgaagccgaa |
129 |
Q |
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||||||| |||| || || ||||||| || ||||| |||| ||||| ||||| || ||||||||||| || |||||| || || || ||||| ||| |
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| T |
13707482 |
tgcagatgttatacagaatttttttcgtttattggctgtttgtcataccgccatgccggaagtggatgaggaaacaggaagagtttcatatgaagctgaa |
13707581 |
T |
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| Q |
130 |
tctcctgatgaagcagcatttgtaattgctgcgagagaaattggttttgaattctataaaagaactcaaactagtttatcaatgtatgaattggatccag |
229 |
Q |
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| T |
13707582 |
tctcctgatgaagcggcatttgtgattgctgcaagagaagtgggttttaaattctacaaaaggacccagaacagtttatcaatgatagagttggatccgg |
13707681 |
T |
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| Q |
230 |
tttctggtgaaaaagttgaaaggt |
253 |
Q |
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||||||| | |||||||||||| |
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| T |
13707682 |
tttctggcaatgaagttgaaaggt |
13707705 |
T |
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