View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_low_21 (Length: 476)
Name: NF11768_low_21
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 49628956 - 49628528
Alignment:
| Q |
1 |
ttagtggtaaaacctaggagcagcaacgtttcttcttgtgtgttaattgtgattgcgaaatgcggcaattgggaagcgtccattgttgtgtttaattttc |
100 |
Q |
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| T |
49628956 |
ttagtggtaaaacctaggagcagcaacgtttctt---gtgtgttaattgtgattgcgaaatgcggcaattgggaagcgtccattgttgtgtttaattttc |
49628860 |
T |
|
| Q |
101 |
ctaaaatgtagatggatctgtacgggttttattttctttttcattgatcactattgctgctactatttgaagtagtaacaaaatattttgtacgaaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49628859 |
ctaaaatgtagatggatctgtacgggttttattttctttttcatcgatcactattgctgctactatttgaagtagtaacaaaatattttgtacg------ |
49628766 |
T |
|
| Q |
201 |
gatacgaaaaaataggaccagtcaatcactgaattaatgacaaaaatggagggttaattaatttaattaaagattcagtcaaagatcggatgtcttaaag |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49628765 |
------aaaaaataggaccattcaatcactgaattaatgacaaaaatggagggttaattaatttaattaaagattcagtcaaagatcggatgtgttaaag |
49628672 |
T |
|
| Q |
301 |
taattcaattcatttatttacaaacnnnnnnnnnnnnnnnnnaattcaaatttaaggtttgaattaaaaattcaccttcttttatctattcattcattat |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49628671 |
taattcaattcatttatttacaaacttttcttttatatttttaattcaaatttaaggtttgaattaaaaattcaccttcttttatctattcattcattat |
49628572 |
T |
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| Q |
401 |
ttcttttctttttggatcctacagcattactattcaatcttttc |
444 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
49628571 |
ttcttttctttttgggtcctacaacattactattcaatcttttc |
49628528 |
T |
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