View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11768_low_23 (Length: 461)
Name: NF11768_low_23
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 10284271 - 10283818
Alignment:
| Q |
1 |
tactgccaccttttatgtggactacttttcagagaagaagttcaattggtttcgtccacatttgcacatagcattgtgaatgctttcagaacatttgaac |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10284271 |
tactgccacctcttatgtggactacttttcagagaagaagttcaattggtttcgtccacatttgcacatagcattgtgaatgctttcagaacatttgaac |
10284172 |
T |
|
| Q |
101 |
aagtttgggaagaacttgttactgatatcaaagaaggtgttcttagcagtagaatcacacatccatccattagaactgctatgtcaaaattgctgaaacc |
200 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10284171 |
aaatttgggaagaacttgttactgatatcaaagaaggtgttcttagcagtagaatcacacatccatccattagaactgctatgtcaaaattgctgaaacc |
10284072 |
T |
|
| Q |
201 |
aaatcctgaactagctaacttgatccacaagaaatgctcaggattaagcaattggtatggattgataccagagctttttccaaatgctaagtatgttcta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10284071 |
aaatcctgaactagctaacttgatccacaagaaatgctcaggattaagcaactggtatggattgataccagagctttttccaaatgctaagtatgttcta |
10283972 |
T |
|
| Q |
301 |
gggatcatgacaggtgcaatggaaccttatatgaaaaagctgagacattatgcagtagaagttcctttgttaacttctgattatggtgcttctgaaggtt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10283971 |
gggatcatgacaggtgcaatggaaccttatatgaaaaagctgagacattatgcaggagaagttcctttgttaacttctgattatggtgcttctgaaggtt |
10283872 |
T |
|
| Q |
401 |
ggattagtttaaatttgaatcctaaagtggctcctgagtttgctgcctatgcta |
454 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||| | ||||||| |
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|
| T |
10283871 |
ggattggttcaaatttgaatcctaaagtggctcctgagtttgctacttatgcta |
10283818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 10243447 - 10243004
Alignment:
| Q |
1 |
tactgccaccttttatgtggactacttttcagagaagaagttcaattggtttcgtccacatttgcacatagcattgtgaatgctttcagaacatttgaac |
100 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||||||||| ||||||| |||| || |||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
10243447 |
tactgccacctcttatgtggactgctttgcagagaagaaattcaattaatttcatcaacatttgcacatagcattgtctatgctttcagaacctttgaac |
10243348 |
T |
|
| Q |
101 |
aagtttgggaagaacttgttactgatatcaaagaaggtgttcttagcagtagaatcacacatccatccattagaactgctatgtcaaaattgctgaaacc |
200 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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|
| T |
10243347 |
aagtttgggaagaacttattactgacatcaaagaaggtgttcttagcagtagaatcacacatccatccattagaactgcaatgtcaaaactgctgaaacc |
10243248 |
T |
|
| Q |
201 |
aaatcctgaactagctaacttgatccacaagaaatgctcaggattaagcaattggtatggattgataccagagctttttccaaatgctaagtatgttcta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| |||| ||||||||||| | |
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|
| T |
10243247 |
aaatcctgaactagctaacttgatccacaagaaatgcataggattgagcaattggtatggactgataccagagctttttcctaatgttaagtatgttcaa |
10243148 |
T |
|
| Q |
301 |
gggatcatgacaggtgcaatggaaccttatatgaaaaagctgagacattatgcagtagaagttcctttgttaacttctgattatggtgcttctgaaggtt |
400 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||| ||||||| ||||||| ||| ||||||||||| |||||||| ||||| |||||||||||| |
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|
| T |
10243147 |
gggatcatgactggtgcaatggaaccttatgtgaaaaagttgagacactatgcaggagaggttcctttgttgacttctgagtatggctcttctgaaggtt |
10243048 |
T |
|
| Q |
401 |
ggattagtttaaatttgaatcctaaagtggctcctgagtttgct |
444 |
Q |
| |
|
||||| || |||| ||||||||||||||||||||||||||||| |
|
|
| T |
10243047 |
ggattgcttcaaatgtgaatcctaaagtggctcctgagtttgct |
10243004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 10273029 - 10272586
Alignment:
| Q |
1 |
tactgccaccttttatgtggactacttttcagagaagaagttcaattggtttcgtccacatttgcacatagcattgtgaatgctttcagaacatttgaac |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| || |||| | |||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
10273029 |
tactgccacctcttatgtggactacttttcagagaagaagttagtttaatttcagcaccatttgcacacagccttgtgaatgctttcagaacatttgaac |
10272930 |
T |
|
| Q |
101 |
aagtttgggaagaacttgttactgatatcaaagaaggtgttcttagcagtagaatcacacatccatccattagaactgctatgtcaaaattgctgaaacc |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||| ||| |
|
|
| T |
10272929 |
aagtttgggaggaacttgttactgatatcagagaaggtgttcttagcagtagaatcacacatccattcattagaactgctatgtctaaactgctgacacc |
10272830 |
T |
|
| Q |
201 |
aaatcctgaactagctaacttgatccacaagaaatgctcaggattaagcaattggtatggattgataccagagctttttccaaatgctaagtatgttcta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| || |||||||||||| ||||| |
|
|
| T |
10272829 |
aaatcctgaactagctaacttgatccacaagaaatgcataggattgagcaattggtatggattgataccggagcttttccctaatgctaagtatcttcta |
10272730 |
T |
|
| Q |
301 |
gggatcatgacaggtgcaatggaaccttatatgaaaaagctgagacattatgcagtagaagttcctttgttaacttctgattatggtgcttctgaaggtt |
400 |
Q |
| |
|
||||||||||||||| ||||||||| ||| |||||||| ||||||| ||||||| ||| ||||||||| | |||||||| ||||| |||||||||||| |
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|
| T |
10272729 |
gggatcatgacaggttcaatggaacattacttgaaaaagttgagacactatgcaggagaggttcctttggtgacttctgagtatggctcttctgaaggtt |
10272630 |
T |
|
| Q |
401 |
ggattagtttaaatttgaatcctaaagtggctcctgagtttgct |
444 |
Q |
| |
|
||||| || |||| ||||||||||||||||||||||||||||| |
|
|
| T |
10272629 |
ggattgcttcaaatgtgaatcctaaagtggctcctgagtttgct |
10272586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 10265332 - 10264889
Alignment:
| Q |
1 |
tactgccaccttttatgtggactacttttcagagaagaagttcaattggtttcgtccacatttgcacatagcattgtgaatgctttcagaacatttgaac |
100 |
Q |
| |
|
||||| ||||| |||||||||||| ||||||||||||||||| || |||| || ||||||||||| ||| ||||| ||||||||||||||||||||| |
|
|
| T |
10265332 |
tactgtcacctcttatgtggactatttttcagagaagaagttagtttaatttcatcaacatttgcacacagccttgtgtatgctttcagaacatttgaac |
10265233 |
T |
|
| Q |
101 |
aagtttgggaagaacttgttactgatatcaaagaaggtgttcttagcagtagaatcacacatccatccattagaactgctatgtcaaaattgctgaaacc |
200 |
Q |
| |
|
|||||||||| ||||||||| |||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
10265232 |
aagtttgggaggaacttgtttttgatatcagagaaggtgttcttagcaatagggtaacacatccatccattagaactgctatgtctaaactgctgaaacc |
10265133 |
T |
|
| Q |
201 |
aaatcctgaactagctaacttgatccacaagaaatgctcaggattaagcaattggtatggattgataccagagctttttccaaatgctaagtatgttcta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| |||||||| |||| ||||||||||||| |
|
|
| T |
10265132 |
aaatcctgaactagctaacttgatccacaagaaatgcataggattgagcgattggtatggattgataccagaactttttcctaatgttaagtatgttcta |
10265033 |
T |
|
| Q |
301 |
gggatcatgacaggtgcaatggaaccttatatgaaaaagctgagacattatgcagtagaagttcctttgttaacttctgattatggtgcttctgaaggtt |
400 |
Q |
| |
|
|| |||||||||||| ||||||||| ||| |||||||| ||||||| ||||||| ||| ||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
10265032 |
ggaatcatgacaggttcaatggaacattacttgaaaaagttgagacactatgcaggagaggttcctttgttgacttctgaatatggtgcttctgaaggtt |
10264933 |
T |
|
| Q |
401 |
ggattagtttaaatttgaatcctaaagtggctcctgagtttgct |
444 |
Q |
| |
|
||||| || |||| ||||||||||||||||||||||||||||| |
|
|
| T |
10264932 |
ggattgcttcaaatgtgaatcctaaagtggctcctgagtttgct |
10264889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 293
Target Start/End: Complemental strand, 13979996 - 13979838
Alignment:
| Q |
133 |
gaaggtgttcttagcagtagaatcacacatccatccattagaactgctatgtcaaaattgctgaaaccaaatcctgaactagctaacttgatccacaaga |
232 |
Q |
| |
|
||||| |||||||| |||||| ||||| ||||||| ||| ||| ||||||| |||||||| ||||||||||| ||| ||||| || | |||||||| | |
|
|
| T |
13979996 |
gaaggagttcttagtagtagagtcacagatccatcgattcgaat--ctatgtctaaattgctcaaaccaaatccagaattagctgacataatccacaaaa |
13979899 |
T |
|
| Q |
233 |
aatgctcaggattaagcaattggtatggattgataccagagctttttccaaatgctaagta |
293 |
Q |
| |
|
|||| ||| || | ||||||||||| ||| |||||||| | ||||| ||||| ||||| |
|
|
| T |
13979898 |
aatgtctagggttgaataattggtatggtttgttaccagagttgtttcctaatgcgaagta |
13979838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 48367493 - 48367773
Alignment:
| Q |
13 |
ttatgtggactacttttcagagaagaagttcaattggtttcgtccacatttgcacatagcattgtgaatgctttcagaacatttgaacaagtttgggaag |
112 |
Q |
| |
|
||||| |||||| ||||| | || || ||||||||||| | || |||||||||||||||||||| |||| |||||| | ||||||||||||||||||| |
|
|
| T |
48367493 |
ttatgcggactaattttccgcgaggaggttcaattggtatgttcaacatttgcacatagcattgttcatgccttcagatcctttgaacaagtttgggaag |
48367592 |
T |
|
| Q |
113 |
aacttgttactgatatcaaagaaggtgttcttagcagtagaatcacacatccatccattagaactgctatgtcaaaattgctgaaaccaaatcctgaact |
212 |
Q |
| |
|
| ||| || |||||| | ||||||||||||||| || ||| |||| ||| |||||| ||||||||||||| |||||||| ||||||||||| ||| | |
|
|
| T |
48367593 |
agctttgtaatgatataagagaaggtgttcttagtagcagagtcacggttccctccattcgaactgctatgtctaaattgctcaaaccaaatccagaatt |
48367692 |
T |
|
| Q |
213 |
agctaacttgatccacaagaaatgctcaggattaagcaattggtatggattgataccagagctttttccaaatgctaagta |
293 |
Q |
| |
|
||| ||| | |||||||| | ||| |||||||||||| |||||||| |||||||| ||||||||||| ||||| ||||| |
|
|
| T |
48367693 |
agcgaacataatccacaaaagatgtataggattaagcaactggtatggtttgataccggagctttttccgaatgcaaagta |
48367773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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