View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_low_24 (Length: 459)
Name: NF11768_low_24
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 20 - 452
Target Start/End: Original strand, 39682438 - 39682870
Alignment:
| Q |
20 |
cgcttaaatttaataaaaaatctgttaacataaactatctcaaagaggttattagaatatgttgaaaacaatctataggcgtgttataagctagttttca |
119 |
Q |
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| T |
39682438 |
cgcttaaatttaataaaaaatctgttaacataaactatctcaaagaggttattagaatatgttgaaaacaatctataggcgtgttataagctagttttca |
39682537 |
T |
|
| Q |
120 |
agtatgtgatcagataaactcaaaataagcgtatgcggagtttaaactttaaactcaattaagctctaaataaccttttccagatgtcccaatagtgcat |
219 |
Q |
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| T |
39682538 |
agtatgtgatcagataaactcaaaataagcgtatgcggagtttaaactttaaactcaattaagctctaaataaccttttccagatgtcccaatagtgcat |
39682637 |
T |
|
| Q |
220 |
tgttaaggattaatttcttccttatagctgaaacatttttataaacttgcagatattgttcaaatatcctcctgcaaggagcttcacagtgcgtatgcag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39682638 |
tgttaaggattaatttcttccttatagctgaaacatttttgtaaacttgcagatattgttcaaatatcctcctgcaaggagcttcacagtgcgtatgcag |
39682737 |
T |
|
| Q |
320 |
gatttagcctccttttgctttcctgaaggtgttaaggtctgtttgactgttaatatacttgatcagatatgtcctttttctccttgttaaatactatctt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
39682738 |
gatttagcctccttttgctttcctgaaggtgttaaggtctgtttgactgttaatatacttgatcagatatgtcctttttctctttgttaaatgctatctt |
39682837 |
T |
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| Q |
420 |
taaaatggtttttagtttacctctttcttctct |
452 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
39682838 |
taaaatggtttttagtttacctcttttttctct |
39682870 |
T |
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