View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_low_25 (Length: 457)
Name: NF11768_low_25
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 50423025 - 50422586
Alignment:
| Q |
1 |
cctgaaacaattccaaattctcgttccttcgttgtgaatatatcagatccttgaatctccaaggtgcttcctctatactcaccagctgtgaatatcaccg |
100 |
Q |
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| T |
50423025 |
cctgaaacaattccaaattctcgttccttcgttgtgaatatatcagatccttgaatctccaaggtgcttcctctatactcaccagctgtgaatatcaccg |
50422926 |
T |
|
| Q |
101 |
agaaaaccatgtacaaagctttaccatcaagctgcgaatttatgtacgtgccttgagctctaccgatgagttttgaatccattgtaggtccctcggttac |
200 |
Q |
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| T |
50422925 |
agaaaaccatgtacaaagctttaccatcaagctgcgaatttatgtacgtgccttgagctctaccgatgagttttgaatccattgtaggtccctcggttac |
50422826 |
T |
|
| Q |
201 |
tggatcgtcaactatagctacggtgccaaagtgtaggatgctggaggtaactccagttttaccagcaactgtagctgcggtggagtcttcaccggtgaag |
300 |
Q |
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| T |
50422825 |
tggatcgtcaactatagctacggtgccaaagtgtaggatgctggaggtaactccagttttaccagcaactgtagctgcggtggagtcttcaccggtgaag |
50422726 |
T |
|
| Q |
301 |
tggtcatggacgtagaagacgaggttggtttggtttggttcgagtttagggaaggtataggctacatagaagatggtcaatgtgaagatgaagaagaaga |
400 |
Q |
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| T |
50422725 |
tggtcatggacgtagaagacgaggttggtttggtttggttcgagtttagggaaggtataggctacatagatgatggtcaatgtgaagatgaagaagaaga |
50422626 |
T |
|
| Q |
401 |
agttggaagtgagattcaacggattggccatgcttgtggc |
440 |
Q |
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| T |
50422625 |
agttggaagtgagattcaacggattggccatgcttgtggc |
50422586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 4 - 434
Target Start/End: Complemental strand, 50428195 - 50427765
Alignment:
| Q |
4 |
gaaacaattccaaattctcgttccttcgttgtgaatatatcagatccttgaatctccaaggtgcttcctctatactcaccagctgtgaatatcaccgaga |
103 |
Q |
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|||||||| |||||||||| |||||| ||||| ||| | | ||||||| |||||||| ||||||||| | |||| ||||| ||||||||||| |||| |
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| T |
50428195 |
gaaacaatcccaaattctctttcctttgttgtatataaactatatccttgcatctccaatgtgcttcctatgtacttaccagaagtgaatatcactgaga |
50428096 |
T |
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| Q |
104 |
aaaccatgtacaaagctttaccatcaagctgcgaatttatgtacgtgccttgagctctaccgatgagttttgaatccattgtaggtccctcggttactgg |
203 |
Q |
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| T |
50428095 |
aaaccatgtacactgctttgctatcaagctgcgaatttacgtacacgccctgagcactgccaaggagtgttgaatccattgcgggtccctctgttactgg |
50427996 |
T |
|
| Q |
204 |
atcgtcaactatagctacggtgccaaagtgtaggatgctggaggtaactccagttttaccagcaactgtagctgcggtggagtcttcaccggtgaagtgg |
303 |
Q |
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||| || | ||| || |||||||| |||||| |||| | || | |||| || |||| ||||| || |||| | | || |||||||||||||||| |
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| T |
50427995 |
atcatcgattattgccacggtgccgaagtgttggatattaaagttgggtccatttataccggcaacggtgactgccgacgtgttttcaccggtgaagtgg |
50427896 |
T |
|
| Q |
304 |
tcatggacgtagaagacgaggttggtttggtttggttcgagtttagggaaggtataggctacatagaagatggtcaatgtgaagatgaagaagaagaagt |
403 |
Q |
| |
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|| || | |||||||| | ||||||||| |||||||||||||| ||||||| ||||| ||||||| |||| ||||||||||||||||||| || || |
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| T |
50427895 |
tcgtgaatgtagaagagcatgttggtttgatttggttcgagtttttggaaggtgtaggccacatagaggatgatcaatgtgaagatgaagaaaaatgagc |
50427796 |
T |
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| Q |
404 |
tggaagtgagattcaacggattggccatgct |
434 |
Q |
| |
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|||||||||| || | |||||| ||||||| |
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| T |
50427795 |
tggaagtgaggtttagtggattgaccatgct |
50427765 |
T |
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