View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_low_26 (Length: 452)
Name: NF11768_low_26
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 109 - 441
Target Start/End: Original strand, 31160221 - 31160560
Alignment:
| Q |
109 |
taagtcaccaagcaagttccattaaaaagagggactgcaaaaagaacagataacaaactatacctgcttctttggcagctgaaaagctggcatgcacatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31160221 |
taagtcaccaagcaagttccattaaaaagagggactgcaaaaagaacagataacaaactatacctgcttctttggcagctgaaaagctggcatgcacatt |
31160320 |
T |
|
| Q |
209 |
gtaaattcaaagccaa-------aaccacaagcaaactgaacagaaggtgagaaaataattgttgcggtgttataagcaaatttagtaaaaacaagttca |
301 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31160321 |
gtaaattcaaagccaaaacccaaaaccacaagcaaactgaacagaaggtgagaaaataattgttgcggtgttataagcaaatttagtaaaaacaagttca |
31160420 |
T |
|
| Q |
302 |
taagttaaggagaatgctaaatagtaacttctagaagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaa |
401 |
Q |
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||||||||||| |||||||||||||||||| ||||||| ||||||| | |||||||||||||||| ||||||||||| |||||||||||| || ||||| |
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| T |
31160421 |
taagttaaggaaaatgctaaatagtaacttttagaagcctctagagcttgaaagaaagactttaaataccctcattatttgaggcttaaggcacgacaaa |
31160520 |
T |
|
| Q |
402 |
tcaggcacatagagggctataaatatcacccttcatctca |
441 |
Q |
| |
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||| || ||||||||||||||||||||||||||| ||||| |
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| T |
31160521 |
tcaagctcatagagggctataaatatcacccttcttctca |
31160560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 31159241 - 31159346
Alignment:
| Q |
7 |
tatcatatgtcgtcccaattgccaaagcaatctttagtgtcatcattgattaattacggtgggcagaggttccataaaaatctgattctgaaatcacctg |
106 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31159241 |
tatcataggtcgtcccaattcccaaagcaatctttagtgtcatcattgattaattacggtgggcagaggttccataaaaatctgattctgaaatcacctg |
31159340 |
T |
|
| Q |
107 |
cctaag |
112 |
Q |
| |
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|||||| |
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| T |
31159341 |
cctaag |
31159346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 327 - 434
Target Start/End: Complemental strand, 24909259 - 24909153
Alignment:
| Q |
327 |
aacttctagaagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaatcaggcacatagagggctataaata |
426 |
Q |
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||||||||||||| ||||||| ||| |||||||||| || |||||||||||||||| |||||||||| | ||| ||||| || | ||||||||||||| |
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| T |
24909259 |
aacttctagaagcctctagagctcggcagaaagactt-aagtaccctcattacttgaagcttaagtcacgataaaacaggcccacaaagggctataaata |
24909161 |
T |
|
| Q |
427 |
tcaccctt |
434 |
Q |
| |
|
||||||| |
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|
| T |
24909160 |
ccaccctt |
24909153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 327 - 434
Target Start/End: Complemental strand, 24911480 - 24911374
Alignment:
| Q |
327 |
aacttctagaagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaatcaggcacatagagggctataaata |
426 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||||||| || |||||||||||||||| |||||||||| | ||| ||||| || | ||||||||||||| |
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| T |
24911480 |
aacttctagaagcctctagagctcggcagaaagactt-aagtaccctcattacttgaagcttaagtcacgataaaacaggcccacaaagggctataaata |
24911382 |
T |
|
| Q |
427 |
tcaccctt |
434 |
Q |
| |
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||||||| |
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|
| T |
24911381 |
ccaccctt |
24911374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 434
Target Start/End: Complemental strand, 14082890 - 14082787
Alignment:
| Q |
329 |
cttctagaagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaatcaggcacatagagggctataaatatc |
428 |
Q |
| |
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||||||||||| ||||||| | | ||||| |||| || ||||||||||||||| ||||||||||| ||| ||||| || ||| ||||||||||||||| |
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| T |
14082890 |
cttctagaagcctctagagcttggcagaaaaactt-aagtaccctcattacttg-ggcttaagtcacgacagatcagacatataaagggctataaatatc |
14082793 |
T |
|
| Q |
429 |
accctt |
434 |
Q |
| |
|
|||||| |
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|
| T |
14082792 |
accctt |
14082787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 394
Target Start/End: Complemental strand, 14654359 - 14654302
Alignment:
| Q |
336 |
aagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtca |
394 |
Q |
| |
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|||| ||||||| ||| |||||||||| || ||||||||||||||||||||||||||| |
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|
| T |
14654359 |
aagcctctagagctcggcagaaagactt-aagtaccctcattacttgaggcttaagtca |
14654302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 434
Target Start/End: Complemental strand, 12697365 - 12697261
Alignment:
| Q |
329 |
cttctagaagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaatcaggcacatagagggctataaatatc |
428 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||| ||||| | ||||||||||||| ||||||||||| |||||| || |||||||||||||||||| | |
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| T |
12697365 |
cttctagaagcctctagagctcggcagaaaga-tttaaatgccctcattacttggggcttaagtcacaggaaatcaagcccatagagggctataaatacc |
12697267 |
T |
|
| Q |
429 |
accctt |
434 |
Q |
| |
|
|||||| |
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|
| T |
12697266 |
accctt |
12697261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 434
Target Start/End: Complemental strand, 9375670 - 9375568
Alignment:
| Q |
331 |
tctagaagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaatcaggcacatagagggctataaatatcac |
430 |
Q |
| |
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||||||||| ||||||||| || |||||||||| ||| ||||||||||||| ||||||||||| | | ||||| |||||||||||||||||| ||| |
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| T |
9375670 |
tctagaagcctctagagttggatagaaagacttaaatg-ccctcattacttggggcttaagtcacgagagttcaggtccatagagggctataaataccac |
9375572 |
T |
|
| Q |
431 |
cctt |
434 |
Q |
| |
|
|||| |
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|
| T |
9375571 |
cctt |
9375568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 426
Target Start/End: Original strand, 9161087 - 9161183
Alignment:
| Q |
329 |
cttctagaagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaatcaggcacatagagggctataaata |
426 |
Q |
| |
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||||||||||| ||||||| ||| | |||||||| || ||||||| |||||||||||||| |||| ||| ||||||| | |||||||||||||||| |
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| T |
9161087 |
cttctagaagcgtctagagctcggcataaagactt-aagtaccctcgttacttgaggcttatgtcacgacagatcaggcccctagagggctataaata |
9161183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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