View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_low_27 (Length: 448)
Name: NF11768_low_27
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 19 - 437
Target Start/End: Original strand, 37717473 - 37717891
Alignment:
| Q |
19 |
ttacacggtatccaattatttttgttgcagctgctaaagctaccacaataattatgtctgtcacatacgtctgatggccgcgaccactcgttcatccatt |
118 |
Q |
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| T |
37717473 |
ttacacggtatccaattatttttgttgcagctgctaaagctaccacaataattatgtctgtcacatacgtctgatggccgcgaccactcgttcatccatt |
37717572 |
T |
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| Q |
119 |
gaatgtcataccacctccaaaattgtatatccccagtagaattcattaataaccttgatttatcgtaattaaaagatcgttgtttgatggttatgtctct |
218 |
Q |
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| T |
37717573 |
gaatgtcataccacctccaaaattgtatatccccagtagaattcattaataaccttgatttatcgtaattaaaagatcgttgtttgatggttatgtctct |
37717672 |
T |
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| Q |
219 |
atacttgtgcaatgaattagaggtcgagttctccaacaagtcaagaatgatgttgaacatcttatctgaattgtgtccatcaaatgcccaataaagttgt |
318 |
Q |
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| T |
37717673 |
atacttgtgcaatgaattagaggtcgagttctccaacaagtcaagaatgatgttgaacatcttatctgaattgtgtccatcaaatgcccaataaagttgt |
37717772 |
T |
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| Q |
319 |
gactgattgtttactctatagcttcgagggtcgcctgtttgtgccttctgaaaggcgaagcttccaattcctggatcgttctcatttttccaagaactca |
418 |
Q |
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| T |
37717773 |
gactgattgtttactctatagcttcgagggtcgcctgtttgtgccttctgaaaggcgaagcttccaattcctggatcgttctcatttttccaagaactca |
37717872 |
T |
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| Q |
419 |
aagttaaattgatgtccat |
437 |
Q |
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| T |
37717873 |
aagctaaatttatgtccat |
37717891 |
T |
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