View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_low_28 (Length: 447)
Name: NF11768_low_28
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_28 |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 1725780 - 1725350
Alignment:
| Q |
1 |
ctttgtgcataagcaccactaataaaagaaaatctaacatgcatcaaaatcaacatttttacatagtatttggttgaagagaaatagagacgaggagggt |
100 |
Q |
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| T |
1725780 |
ctttgtgcataagcaccactaataaaaaaaaatctaacatgcatcgaaatcaacatttttacatagtatttggttgaagagaaatagagacgaggagagt |
1725681 |
T |
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| Q |
101 |
aataattttaaatctttattgtgtgattcaatttcttgaagggaatgggagagtcaaaatcctcttataatgacatgaaaatttataaggatatacaaag |
200 |
Q |
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| T |
1725680 |
aataattttaaatctttattgtgtgattcaatttcttgaagggaatgggagagtcaaaatcctcttataatgacatgaaaatttataaggatatacaaag |
1725581 |
T |
|
| Q |
201 |
tatannnnnnnatggtcttaatcccccagtttctagggcccctagtaatttggggattgggtggggatgtaaatgaagtctagccaataattgtttcagc |
300 |
Q |
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| T |
1725580 |
tatatttttttatggtcttaatcccccagtttctagggcccctagtaatttggggattgggtggggatggaaatgaagtctagccaataattgtttcagc |
1725481 |
T |
|
| Q |
301 |
taggaatcaaactcagatactccagatggattcgactttaactgaagttcatcaaccacttgattaacaaagtacattaagttgaagaattatgcaatgt |
400 |
Q |
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| T |
1725480 |
taggaatcaaagtcagatactccagatggattcgactttaactgaagttcatcaaccacttgattaacaaagtacattaagtttaagaattatgcaatgt |
1725381 |
T |
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| Q |
401 |
aaaactctaaaatcagatttcaccattttag |
431 |
Q |
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| T |
1725380 |
aaaactctaaaatcagatttcaccattttag |
1725350 |
T |
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Target: scaffold0095 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 361
Target Start/End: Original strand, 20397 - 20474
Alignment:
| Q |
284 |
ccaataattgtttcagctaggaatcaaactcagatactccagatggattcgactttaactgaagttcatcaaccactt |
361 |
Q |
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| T |
20397 |
ccaataattctttcagccagaactcgaactcagatactcccgattgatttgtccttaactgaagtttattaaccactt |
20474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 361
Target Start/End: Complemental strand, 39411384 - 39411307
Alignment:
| Q |
284 |
ccaataattgtttcagctaggaatcaaactcagatactccagatggattcgactttaactgaagttcatcaaccactt |
361 |
Q |
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| T |
39411384 |
ccaataattctttcagccagaactcgaactcagatactcccgattgatttgtccttaactgaagtttattaaccactt |
39411307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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