View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_low_29 (Length: 432)
Name: NF11768_low_29
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Complemental strand, 41784054 - 41783653
Alignment:
| Q |
13 |
agatgaaaacattaaatcttttctttggttagaaaccactttcccaatgagattatcatattgtgcattgagtgactggtactgcttgtataagtcctcc |
112 |
Q |
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| T |
41784054 |
agatgaaaacattaaatcttttctttggttagaaaccactttcccaatgagattatcatattgtgcattaagtgactggtactgcttgtataagtcctcc |
41783955 |
T |
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| Q |
113 |
gttaatcccataagttctgtatcttttctagaacgtctagggctcgcatcttttttgctttggttttcgttcttaataagcttctggatttttgtgatct |
212 |
Q |
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| T |
41783954 |
gttaatcccataagttctgtatcttttctagaacgtctaggactcgcatcttttttgctttggttttcgttcttaataagcttctggatttttgtgatct |
41783855 |
T |
|
| Q |
213 |
tggtttcaatatctgcataaaatgggaaattttgatacatttacattaataaaatcccaaacatttcaaaattcagttagaaaaagctgtcaattgcaaa |
312 |
Q |
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| T |
41783854 |
tggtttcaatgcctgcataaaatgggaaattatgatacatttacattaataaaatcccaaacatttcaaaattcagttagaaaaagctgtcaattgcaaa |
41783755 |
T |
|
| Q |
313 |
gactacaaatataagtgttaagatttcttagttgcaacaatattagcaagaacatcaccgatggtgtagtccaccttggggtgtgctaaagtaggcctta |
412 |
Q |
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| T |
41783754 |
gactacaaatataagtgttacgatttcttagttgcaacaatattagcaagaacatcactgatggtgtagtccgccttggggtgtgctaaagtaggcctta |
41783655 |
T |
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| Q |
413 |
tt |
414 |
Q |
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| T |
41783654 |
tt |
41783653 |
T |
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