View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11768_low_31 (Length: 418)

Name: NF11768_low_31
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11768_low_31
NF11768_low_31
[»] chr4 (15 HSPs)
chr4 (296-418)||(36627590-36627712)
chr4 (19-418)||(36636322-36636718)
chr4 (114-418)||(35968717-35969021)
chr4 (112-416)||(18364604-18364908)
chr4 (112-416)||(36598017-36598321)
chr4 (171-414)||(36910013-36910256)
chr4 (112-309)||(36665397-36665594)
chr4 (32-309)||(36643120-36643400)
chr4 (171-414)||(36629780-36630014)
chr4 (166-310)||(55966534-55966678)
chr4 (193-418)||(36612748-36612973)
chr4 (288-418)||(20211256-20211386)
chr4 (319-417)||(36642979-36643077)
chr4 (31-197)||(38862855-38863018)
chr4 (335-418)||(38862657-38862742)
[»] chr1 (1 HSPs)
chr1 (116-364)||(42602316-42602564)
[»] chr6 (4 HSPs)
chr6 (164-371)||(10812471-10812678)
chr6 (166-304)||(33839786-33839924)
chr6 (164-311)||(10812022-10812169)
chr6 (170-230)||(33843840-33843900)
[»] chr3 (3 HSPs)
chr3 (171-241)||(25597368-25597438)
chr3 (28-89)||(25597234-25597295)
chr3 (29-61)||(25602031-25602063)
[»] chr2 (1 HSPs)
chr2 (191-242)||(38989588-38989639)
[»] chr5 (2 HSPs)
chr5 (116-242)||(19657894-19658020)
chr5 (193-242)||(19674733-19674782)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 296 - 418
Target Start/End: Complemental strand, 36627712 - 36627590
Alignment:
Q  296 gccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcata 395  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36627712 gccaatttagctatgcgtggtatttcatcaaactttttcaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtataccttttcata 36627613  T
Q  396 aaatatgtgggagcggtctttct 418  Q
    |||||||||||||||||||||||    
T  36627612 aaatatgtgggagcggtctttct 36627590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 36636718 - 36636322
Alignment:
Q  19 cattatgcgttgtgtttcttcatgtcaagctcttacatctcttagactttcaatttcccctagaggtggtattggtagtagtaattctagaatattattt 118  Q
    ||||||| | || |||||||||||||  |||||||| ||||| |  |||||||||| ||||| || ||||||| ||||||   ||||| |||||||||||    
T  36636718 cattatgagctgcgtttcttcatgtcgggctcttacttctctgatgctttcaatttaccctaaagatggtatttgtagta---attctggaatattattt 36636622  T
Q  119 ccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccaccttta 218  Q
    ||||  ||||||||||| ||   ||| |||||||||||||| |||||||||| |||||| ||||||||||  ||||||| |||||||||||   |||||     
T  36636621 ccaaaatctttgaatttgccaacattaaccaacttatatctaacaaatttcaacttttgcggtggtgaaaatggttgtgctgagccctttttggcctttc 36636522  T
Q  219 ccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgcgtggtat 318  Q
    ||||||||| ||||||||||||| || |||||  | ||| |||||| ||||||||||  |||||| |||| || |||| ||||||    ||||||  |      
T  36636521 ccaagttgactagtttggtcattcgtagttgtagggtaagggatgcacaaatcctcaggatatcaagtgaaacccttgtcaattttaaaatgcgtaatta 36636422  T
Q  319 ttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcggtctttct 418  Q
    ||||  | ||||| | ||||| ||| ||| | |||||||||||||||||||||  ||||| ||||  ||| |||| |||||||||||||| |||||||||    
T  36636421 ttcagaagactttgcaaaaattgagttatgtgctccaagtctttgtacctttacttttactggtactcctgttcagaaaatatgtgggagtggtctttct 36636322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 114 - 418
Target Start/End: Original strand, 35968717 - 35969021
Alignment:
Q  114 tatttccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccac 213  Q
    |||||||||  | ||||||||| || | |||||||| |||  |||| ||||||||| ||||||| |||| | ||| ||| |||||||| ||||||||| |    
T  35968717 tatttccaaaatatttgaatttgccagcattgaccagcttggatctaacaaatttcgccttttggggtgataaaaacggctgtgttgaccccttttccgc 35968816  T
Q  214 ctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgcgt 313  Q
    |||||| |||||||||||||||||| ||   |||||| || || ||||||||||||||||||| |||||| |||||||||||| | |||||||||||| |    
T  35968817 ctttactaagttgaatagtttggtcctttacggttgtaagatagaggatgctcaaatcctcaagatatcaagtgagacacttgtcgatttagctatgcat 35968916  T
Q  314 ggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcggtc 413  Q
      || |||||| || |||||| |||| ||| | | |||||| |||||||| |||||||   |||||||||  |||  ||| |||||||||||||||||||    
T  35968917 cataattcatctaatttttcccaaattgagttgtctactcctagtctttgcacctttactattaccggtattcctaatcagaaaatatgtgggagcggtc 35969016  T
Q  414 tttct 418  Q
    |||||    
T  35969017 tttct 35969021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 112 - 416
Target Start/End: Original strand, 18364604 - 18364908
Alignment:
Q  112 attatttccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttcc 211  Q
    |||||||||||  ||||||||||| ||   ||||||||||||| ||||  || ||||  ||||||| |||||||||| |||||||| |||||||||||||    
T  18364604 attatttccaaaatctttgaatttgcctttattgaccaacttagatctatcacatttttccttttgcggtggtgaaaacggttgtgctgagcccttttcc 18364703  T
Q  212 acctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgc 311  Q
     ||||| ||||||||||||||||||| |||  ||||||| || |||| ||||||||||| |||| ||||||| |||||||||||| |||||| || ||||    
T  18364704 gcctttcccaagttgaatagtttggttatttctggttgtaaggtaaaagatgctcaaattctcagcatatcaagtgagacacttgtcaattttgcgatgc 18364803  T
Q  312 gtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcgg 411  Q
     |  |  ||| ||||   || ||||||||||| ||| |  ||| ||||||||||||||||  ||| ||||||  | | |||| ||||||||||||||| |    
T  18364804 attattgttcttcaagaattgccaaaatcgagttatctgttcctagtctttgtacctttactttttccggtatgcttgttcagaaaatatgtgggagcag 18364903  T
Q  412 tcttt 416  Q
    |||||    
T  18364904 tcttt 18364908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 112 - 416
Target Start/End: Complemental strand, 36598321 - 36598017
Alignment:
Q  112 attatttccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttcc 211  Q
    |||||||||||  ||||||||||| ||   ||||||||||||| ||||  || ||||  ||||||| |||||||||| |||||||| |||||||||||||    
T  36598321 attatttccaaaatctttgaatttgcctttattgaccaacttagatctatcacatttttccttttgcggtggtgaaaacggttgtgctgagcccttttcc 36598222  T
Q  212 acctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgc 311  Q
     ||||| ||||||||||||||||||| |||  ||||||| || |||| ||||||||||| |||| ||||||| |||||||||||| |||||| || ||||    
T  36598221 gcctttcccaagttgaatagtttggttatttctggttgtaaggtaaaagatgctcaaattctcagcatatcaagtgagacacttgtcaattttgcgatgc 36598122  T
Q  312 gtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcgg 411  Q
     |  |  ||| ||||   || ||||||||||| ||| |  ||| ||||||||||||||||  ||| ||||||  | | |||| ||||||||||||||| |    
T  36598121 attattgttcttcaagaattgccaaaatcgagttatctgttcctagtctttgtacctttactttttccggtatgcttgttcagaaaatatgtgggagcag 36598022  T
Q  412 tcttt 416  Q
    |||||    
T  36598021 tcttt 36598017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 171 - 414
Target Start/End: Original strand, 36910013 - 36910256
Alignment:
Q  171 ccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaat 270  Q
    ||||||| ||| |||||| |||||||| ||||||||||| | ||||||||||||||||||||||||||||| || | |||||| ||||||||||||||||    
T  36910013 ccttttgcggtagtgaaaacggttgtgctgagccctttttcgcctttaccaagttgaatagtttggtcattagtagctgtgaggtaaaggatgctcaaat 36910112  T
Q  271 cctcaacatatcatgtgagacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtaccttt 370  Q
    ||||||||||||| |||||||||||| |||||||||  |||  | || || |    |||||  |||| || || ||| | ||||||||||||||||||||    
T  36910113 cctcaacatatcaagtgagacacttgtcaatttagccctgcacgataatttacttgactttgtcaaattcaagttatctgctccaagtctttgtaccttt 36910212  T
Q  371 aagtttaccggtagacctt-ttcataaaatatgtgggagcggtct 414  Q
    |  ||||||||| |||||| |||| ||||||| ||||||| ||||    
T  36910213 acttttaccggt-gaccttcttcagaaaatatatgggagcagtct 36910256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 112 - 309
Target Start/End: Complemental strand, 36665594 - 36665397
Alignment:
Q  112 attatttccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttcc 211  Q
    |||||||||||  || |||||||| ||   |||||||| |||| || | ||||||||| |||| || |||||||||| |||||||| |||||||||||||    
T  36665594 attatttccaaattcgttgaatttgcctttattgaccagcttagatataacaaatttcgccttctgcggtggtgaaagcggttgtgctgagcccttttcc 36665495  T
Q  212 acctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctat 309  Q
      |||||||| |||||||||||||| | || || ||||| || ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  36665494 gtctttaccatgttgaatagtttggcccttagtagttgtaaggtaaaggatgctcaaatcctcaccatatcaagtgatacacttgccaatttagctat 36665397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 32 - 309
Target Start/End: Complemental strand, 36643400 - 36643120
Alignment:
Q  32 gtttcttcatgtcaagctcttacatctcttagactttcaatttcccctagaggtggt-attggtagtagtaattct--agaat-attatttccaatgtct 127  Q
    ||||||||||| || ||||||||||||||||  |||||| || |||||||||||||| |||  || |  || ||||  ||||  |||||||||||  |||    
T  36643400 gtttcttcatgccacgctcttacatctcttaagctttcacttccccctagaggtggtcattattattt-tacttctgaagaaacattatttccaaaatct 36643302  T
Q  128 ttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttga 227  Q
    |||||||| ||    |||||||||||| || |  |||||||   |||||| |||||||||| |||||||| ||| |||||||   ||||| | |||||||    
T  36643301 ttgaatttgcctttgttgaccaacttagatttagcaaatttagtcttttgcggtggtgaaagcggttgtgctgatccctttttggcctttccaaagttga 36643202  T
Q  228 atagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctat 309  Q
    ||||||||| |||| || ||||| || ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  36643201 atagtttgggcattcgttgttgtaagataaaggatgctcaaatcctcaacatatcaagtgagacacttgtcaatttagctat 36643120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 171 - 414
Target Start/End: Original strand, 36629780 - 36630014
Alignment:
Q  171 ccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaat 270  Q
    ||||||| || ||||||| |||||||| |||||||||||| |||||||| ||||||||||||||| || || || |||||||| ||||||||||||||||    
T  36629780 ccttttgcggcggtgaaaacggttgtgctgagcccttttcgacctttacaaagttgaatagtttgatccttcgtagttgtgaggtaaaggatgctcaaat 36629879  T
Q  271 cctcaacatatcatgtgagacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtaccttt 370  Q
    ||||| ||||||| ||||||| |||| ||| |||||  ||| || |         |||||| ||||||| ||||||| |  ||||||||||||||||||     
T  36629880 cctcagcatatcaagtgagacccttgtcaagttagcattgcttgat---------aactttgccaaaattgagctatctgttccaagtctttgtaccttc 36629970  T
Q  371 aagtttaccggtagacctt-ttcataaaatatgtgggagcggtct 414  Q
    |  ||||||||| |||||| |||| ||||| ||||||||| ||||    
T  36629971 acttttaccggt-gaccttattcagaaaatttgtgggagcagtct 36630014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 166 - 310
Target Start/End: Complemental strand, 55966678 - 55966534
Alignment:
Q  166 tttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgct 265  Q
    ||||| ||| || |||| ||||| |||||||| |||||||||||    |||||||||||||| ||||||||||||| ||| ||||||| ||| ||||||     
T  55966678 tttcatcttctgcggtgatgaaaacggttgtgctgagccctttttgggctttaccaagttgagtagtttggtcattcgtgtttgtgaggtaagggatgca 55966579  T
Q  266 caaatcctcaacatatcatgtgagacacttgccaatttagctatg 310  Q
    ||||| ||||  |||||| || ||||||| | |||||||| ||||    
T  55966578 caaattctcaggatatcaagttagacactaggcaatttagatatg 55966534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 193 - 418
Target Start/End: Complemental strand, 36612973 - 36612748
Alignment:
Q  193 ttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagaca 292  Q
    ||||||||| |||| |||| |||||||||||||||||||||||||||||| | | ||||   | | |||||| |||| |||||  |||||| | ||||||    
T  36612973 ttgtgttgaaccctcttccgcctttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccctcaggatatcaagcgagaca 36612874  T
Q  293 cttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttc 392  Q
    || |  ||||||||||||| ||  | |||||   |||||  ||||||  || |||||||||  ||||||||||||||||  | |||||||   |||  ||    
T  36612873 ctagtaaatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactcagagtctttgtacctttacttataccggtcatcctgatc 36612774  T
Q  393 ataaaatatgtgggagcggtctttct 418  Q
    | | |||||||||||| |||||||||    
T  36612773 agagaatatgtgggagtggtctttct 36612748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 418
Target Start/End: Complemental strand, 20211386 - 20211256
Alignment:
Q  288 agacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagacc 387  Q
    ||||||||| || ||||||||||| |  |  ||||||  ||||| ||||||| ||| ||| |  ||| ||||||||||||||||  ||||||||||  ||    
T  20211386 agacacttgtcattttagctatgcataatgattcatccgactttgccaaaattgagttatctggtccgagtctttgtacctttacttttaccggtattcc 20211287  T
Q  388 ttttcataaaatatgtgggagcggtctttct 418  Q
    |  ||| ||||||||||| ||||||||||||    
T  20211286 tgatcagaaaatatgtggaagcggtctttct 20211256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 417
Target Start/End: Complemental strand, 36643077 - 36642979
Alignment:
Q  319 ttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcggtctttc 417  Q
    |||||| || ||| ||||||| ||||||| |||||||||||||||||| ||||  ||||  ||||| | | |||| |||||||| |||||||| |||||    
T  36643077 ttcatccaaatttgccaaaatagagctatctactccaagtctttgtacatttacttttattggtagtcttattcaaaaaatatgcgggagcggactttc 36642979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 197
Target Start/End: Complemental strand, 38863018 - 38862855
Alignment:
Q  31 tgtttcttcatgtcaagctcttacatctcttagactttcaatttcccctagaggtggtattggtagtagtaattctagaatattatttccaatgtctttg 130  Q
    ||||||||| ||||| ||||||||||||||||   ||||||||| |||||||   || | || |  |||| || || ||| |||||||||||  ||||||    
T  38863018 tgtttcttcttgtcacgctcttacatctcttatgttttcaatttaccctaga---ggcaatgttgatagtgatgctcgaacattatttccaaaatctttg 38862922  T
Q  131 aatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtg 197  Q
    ||||| || | ||| || | ||||  | | |||||||||  ||||||||||||||||| ||||||||    
T  38862921 aatttgcccgcattaactagcttaggtgtaacaaatttcgtcttttgtggtggtgaaaacggttgtg 38862855  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 418
Target Start/End: Complemental strand, 38862742 - 38862657
Alignment:
Q  335 aaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaata--tgtgggagcggtctttct 418  Q
    ||||| ||||||| |||||||||||| ||||||||||  |||| |||||| |||  ||||| ||||  |||||||| |||||||||    
T  38862742 aaaattgagctatctactccaagtctatgtacctttacttttagcggtagtcctaatcatataatatgtgtgggagtggtctttct 38862657  T

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Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 116 - 364
Target Start/End: Complemental strand, 42602564 - 42602316
Alignment:
Q  116 tttccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccacct 215  Q
    |||||||  ||||||||||| |||| |||||||| |||  |||||||||||||  ||||||| |||| |||||  ||| ||| ||| |||||||  ||||    
T  42602564 tttccaaaatctttgaatttgccggcattgaccagcttggatctcacaaattttgccttttgcggtgatgaaaatggtcgtgctgaaccctttttgacct 42602465  T
Q  216 ttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgcgtgg 315  Q
    |||||| ||||||||||||||||||| |  |||||  | |||| ||||| ||||||||||  |||||| |||||||||||| |||||||||||||| |      
T  42602464 ttaccaggttgaatagtttggtcattagcagttgtacggtaaaagatgcacaaatcctcaggatatcaagtgagacacttgtcaatttagctatgcataa 42602365  T
Q  316 tatttcatcaaacttttccaaaatcgagctatttactccaagtctttgt 364  Q
    |||||||||   |||| ||||||||||| ||| | ||||||| ||||||    
T  42602364 tatttcatcttcctttaccaaaatcgagttatctgctccaagcctttgt 42602316  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 164 - 371
Target Start/End: Original strand, 10812471 - 10812678
Alignment:
Q  164 aatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatg 263  Q
    |||||||||||||  |||||||||| ||  | |||||||||||| ||  |||||||||| ||||| |||||| |||||  ||||||| || ||| |||      
T  10812471 aatttcaccttttacggtggtgaaaacgactatgttgagcccttctcggcctttaccaaattgaagagtttgatcattcatggttgtaagataatggaca 10812570  T
Q  264 ctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttg 363  Q
    | |||||| ||||||||||| ||||||||||||  ||||| ||||||  |  || |||||| ||  || ||||||| |||||||  |||||||  |||||    
T  10812571 cacaaatcatcaacatatcaagtgagacacttgtaaattttgctatggattatagttcatctaaaattgccaaaattgagctatccactccaaacctttg 10812670  T
Q  364 taccttta 371  Q
    ||| ||||    
T  10812671 tacgttta 10812678  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 166 - 304
Target Start/End: Complemental strand, 33839924 - 33839786
Alignment:
Q  166 tttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgct 265  Q
    ||||||||| || |||| ||||| | |||||| ||||||||||||  ||||||||||||||||||| ||| ||||| || |||||  | | ||||||||     
T  33839924 tttcaccttctgcggtgatgaaaaccgttgtgctgagcccttttcagcctttaccaagttgaatagcttgatcattagtcgttgtatggttaaggatgca 33839825  T
Q  266 caaatcctcaacatatcatgtgagacacttgccaattta 304  Q
    |||||||||   |||||| |||||||||| | |||||||    
T  33839824 caaatcctccggatatcaagtgagacactagacaattta 33839786  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 311
Target Start/End: Complemental strand, 10812169 - 10812022
Alignment:
Q  164 aatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatg 263  Q
    ||||| |||||||  |||||||||| ||| | ||  |||||||| ||  |||||||||| ||||| |||||| ||||| |||||||| || ||| |||      
T  10812169 aatttgaccttttacggtggtgaaaacggctatgcagagcccttctcggcctttaccaaattgaagagtttgatcattcgtggttgtaaggtaatggaca 10812070  T
Q  264 ctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgc 311  Q
    | |||||| ||||||||||| ||||||||||||  ||||| |||||||    
T  10812069 cacaaatcatcaacatatcaagtgagacacttgttaattttgctatgc 10812022  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 33843900 - 33843840
Alignment:
Q  170 accttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaata 230  Q
    ||||| || |||| |||||  ||||||| ||||||||||||  ||||||||||||||||||    
T  33843900 accttctgcggtgatgaaaatggttgtgctgagcccttttctgcctttaccaagttgaata 33843840  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 25597368 - 25597438
Alignment:
Q  171 ccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcatt 241  Q
    ||||||| |||| ||||| | |||||||||||||||||| | ||||||  | |||||||||||||||||||    
T  25597368 ccttttgcggtgatgaaagcagttgtgttgagccctttttcgcctttaaaatgttgaatagtttggtcatt 25597438  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 25597234 - 25597295
Alignment:
Q  28 ttgtgtttcttcatgtcaagctcttacatctcttagactttcaatttcccctagaggtggta 89  Q
    |||||||||||||||||| ||||||||||||||||  |||||| ||| ||| | ||||||||    
T  25597234 ttgtgtttcttcatgtcacgctcttacatctcttacgctttcagtttacccaaaaggtggta 25597295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 25602031 - 25602063
Alignment:
Q  29 tgtgtttcttcatgtcaagctcttacatctctt 61  Q
    ||||||||||||||||| |||||||||||||||    
T  25602031 tgtgtttcttcatgtcacgctcttacatctctt 25602063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 38989588 - 38989639
Alignment:
Q  191 ggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattg 242  Q
    ||||||||||||||||||||||| ||||  | ||||||||||||| ||||||    
T  38989588 ggttgtgttgagcccttttccacatttaaaatgttgaatagtttgatcattg 38989639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 242
Target Start/End: Complemental strand, 19658020 - 19657894
Alignment:
Q  116 tttccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccacct 215  Q
    |||||||  ||||||||||| ||   ||||||||||||| |||| | | | || | |||| || | ||||||| |  ||||| |||||| |||| |  ||    
T  19658020 tttccaaaatctttgaatttgccatcattgaccaacttaaatctaaaagaatttatctttagttgcggtgaaaacaattgtgctgagccttttttcggct 19657921  T
Q  216 ttaccaagttgaatagtttggtcattg 242  Q
    |||||||||||||||||||||||||||    
T  19657920 ttaccaagttgaatagtttggtcattg 19657894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 19674782 - 19674733
Alignment:
Q  193 ttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattg 242  Q
    ||||| |||||| |||| |  |||||||||||||||||||||||||||||    
T  19674782 ttgtgctgagccttttttcggctttaccaagttgaatagtttggtcattg 19674733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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