View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11768_low_33 (Length: 412)

Name: NF11768_low_33
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11768_low_33
NF11768_low_33
[»] chr2 (16 HSPs)
chr2 (18-402)||(31318358-31318730)
chr2 (104-312)||(31384724-31384938)
chr2 (243-312)||(31254002-31254071)
chr2 (50-175)||(31420900-31421025)
chr2 (67-194)||(31281130-31281257)
chr2 (64-194)||(31254124-31254254)
chr2 (246-312)||(31291547-31291613)
chr2 (245-302)||(31281029-31281086)
chr2 (70-194)||(31291670-31291794)
chr2 (73-180)||(31374096-31374203)
chr2 (236-312)||(31305169-31305245)
chr2 (245-309)||(31359236-31359300)
chr2 (64-166)||(31305325-31305427)
chr2 (104-175)||(31359377-31359445)
chr2 (229-300)||(31421086-31421157)
chr2 (245-290)||(31373984-31374029)


Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 31318730 - 31318358
Alignment:
Q  18 aattaagtagaccaaatcttttgttaagtctctctctaattttcgaattattatcatattctaaatcaaagtatataacttgggtgtagagatctttcat 117  Q
    ||||||||||||||||||||  |||||||||||    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31318730 aattaagtagaccaaatcttccgttaagtctct----aattgtcgaattattatcatattctaaatcaaagtatataacttgggtgtagagatctttcat 31318635  T
Q  118 acaataacttcagcattagccaagggagtcatatatgtcaagatcaaaaagtgtaagattccttgcatttgtgtgcannnnnnngtcacatgattcttcc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||          |||||||||||||||    
T  31318634 acaataacttcagcattagccaagggagtcatatatgtcaagatcaaaaagtgcaagattccttgcatttgtttg----------tcacatgattcttcc 31318545  T
Q  218 tgggacaccaacttctccaatatggcacaggaacttgttttctacttcatgggcacacaatgacatgtaagtttggtgttataaatactaaaacaagaca 317  Q
    || ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31318544 tgagacaccaacttctccaatatggcacaggaacttgttttctatttcatcggcacacaatgacatgtaagtttggtgttataaatactaaaacaagaca 31318445  T
Q  318 ttgaagtttgaatttagatatcctttccatttcactagca--tgatgaatctgattttactaatcatgcacttgttctattcctttg 402  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  31318444 ttgaagtttgaatttagatatcctttccatttcactagcatgtgatgaatctgattttactaatcatgcacttgttctattcctttg 31318358  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 104 - 312
Target Start/End: Complemental strand, 31384938 - 31384724
Alignment:
Q  104 tagagatctttcatacaataacttcagcattagc---caagggagtcatatatgtcaagatcaaaaagtgtaagattccttgcatttgtgtgcannnnnn 200  Q
    |||||||||||||||||||||||||| ||| ||    ||| ||||||| ||||| |||||| ||||||||||||| |||||| |||||||||||          
T  31384938 tagagatctttcatacaataacttcaacatcagtactcaaaggagtcacatatgccaagatgaaaaagtgtaagaatccttgtatttgtgtgcacttgtt 31384839  T
Q  201 ngtcacat---gattcttcctgggacaccaacttctccaatatggcacaggaacttgttttctacttcatgggcacacaatgacatgtaagtttggtgtt 297  Q
     || |  |   ||  ||| ||| |||||||||||||| |||||| | ||||||||||||||||||||||||| ||| |||||||||||||||||||| ||    
T  31384838 tgtaaacttaggaacctttctgagacaccaacttctctaatatgtcgcaggaacttgttttctacttcatggacacgcaatgacatgtaagtttggtatt 31384739  T
Q  298 ataaatactaaaaca 312  Q
    |||||||||||||||    
T  31384738 ataaatactaaaaca 31384724  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 31254071 - 31254002
Alignment:
Q  243 cacaggaacttgttttctacttcatgggcacacaatgacatgtaagtttggtgttataaatactaaaaca 312  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  31254071 cacaggaacttgttttctccttcattggcacacaatgacatgtaagtttggtcttataaatactaaaaca 31254002  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 50 - 175
Target Start/End: Original strand, 31420900 - 31421025
Alignment:
Q  50 tctctaattttcgaattattatcatattctaaatcaaagtatataacttgggtgtagagatctttcatacaataacttcagcattagccaagggagtcat 149  Q
    ||||| ||| ||| || ||||| |||||||||||||||   ||| ||||| ||  ||||||||||||||||||||||||||||| ||||||||||||||     
T  31420900 tctctgattgtcgcataattataatattctaaatcaaatattatgacttgtgtacagagatctttcatacaataacttcagcatcagccaagggagtcag 31420999  T
Q  150 atatgtcaagatcaaaaagtgtaaga 175  Q
    |||||| ||||| |||| ||||||||    
T  31421000 atatgtaaagatgaaaatgtgtaaga 31421025  T

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Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 67 - 194
Target Start/End: Complemental strand, 31281257 - 31281130
Alignment:
Q  67 attatcatattctaaatcaaagtatataacttgggtgtagagatctttcatacaataacttcagcattagccaagggagtcatatatgtcaagatcaaaa 166  Q
    ||||| ||||||| | ||||| ||||| |||||  | |||||||||||| ||||||||||||| ||| || ||||||||||| ||||||||  || ||||    
T  31281257 attattatattctgagtcaaactatatgacttgtatatagagatctttcttacaataacttcaacatcagacaagggagtcagatatgtcaccatgaaaa 31281158  T
Q  167 agtgtaagattccttgcatttgtgtgca 194  Q
    ||||||||| | ||||||||||| ||||    
T  31281157 agtgtaagaatacttgcatttgtttgca 31281130  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 31254254 - 31254124
Alignment:
Q  64 attattatcatattctaaatcaaagtatataacttgggtgtagagatctttcatacaataacttcagcattagccaagggagtcatatatgtcaagatca 163  Q
    |||||||||||| ||| ||||||| | ||| |||||  | ||||||| |||||||||||||||| ||||  |||||||||||||| |||||||||  | |    
T  31254254 attattatcataatctgaatcaaattttatgacttgtatatagagatatttcatacaataacttaagcaacagccaagggagtcagatatgtcaaagtga 31254155  T
Q  164 aaaagtgtaagattccttgcatttgtgtgca 194  Q
     ||| ||||||| ||||||||||| ||||||    
T  31254154 taaactgtaagaatccttgcatttttgtgca 31254124  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 31291613 - 31291547
Alignment:
Q  246 aggaacttgttttctacttcatgggcacacaatgacatgtaagtttggtgttataaatactaaaaca 312  Q
    ||||||||||||||| | |||| ||||||||||||||||||||||| || |||||||||||||||||    
T  31291613 aggaacttgttttctccctcattggcacacaatgacatgtaagtttagtcttataaatactaaaaca 31291547  T

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Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 31281086 - 31281029
Alignment:
Q  245 caggaacttgttttctacttcatgggcacacaatgacatgtaagtttggtgttataaa 302  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  31281086 caggaacttgttttctacctcatgggcacacaattacatgtaagtttggtcttataaa 31281029  T

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Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 194
Target Start/End: Complemental strand, 31291794 - 31291670
Alignment:
Q  70 atcatattctaaatcaaagtatataacttgggtgtagagatctttcatacaataacttcagcattagccaagggagtcatatatgtcaagatcaaaaagt 169  Q
    |||||||||| ||||||| | |||  ||||  | ||| |||||||||||||||||||| ||||| |||||||||| ||| |||||||||  | | ||| |    
T  31291794 atcatattctgaatcaaattttatggcttgtatatagtgatctttcatacaataacttaagcatcagccaagggaatcagatatgtcaaagtgataaact 31291695  T
Q  170 gtaagattccttgcatttgtgtgca 194  Q
    |||||| ||||||||||| ||||||    
T  31291694 gtaagaatccttgcatttttgtgca 31291670  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 31374203 - 31374096
Alignment:
Q  73 atattctaaatcaaagtatataacttgggtgtagagatctttcatacaataacttcagcattagccaagggagtcatatatgtcaagatcaaaaagtgta 172  Q
    ||||||| ||||||| |||||  ||||  | |||||| ||||| ||||||||||||| ||| ||||||| |||||| |||||||| ||| ||||||||||    
T  31374203 atattctgaatcaaactatatggcttgtatatagagacctttcttacaataacttcaacatcagccaagagagtcagatatgtcacgatgaaaaagtgta 31374104  T
Q  173 agattcct 180  Q
    ||| ||||    
T  31374103 agaatcct 31374096  T

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Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 31305245 - 31305169
Alignment:
Q  236 aatatggcacaggaacttgttttctacttcatgggcacacaatgacatgtaagtttggtgttataaatactaaaaca 312  Q
    |||||| ||||||||||||||||||||| |||||||||||||    | |||||||| || |||||||||||||||||    
T  31305245 aatatgtcacaggaacttgttttctactgcatgggcacacaacagaaagtaagttttgtattataaatactaaaaca 31305169  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 31359300 - 31359236
Alignment:
Q  245 caggaacttgttttctacttcatgggcacacaatgacatgtaagtttggtgttataaatactaaa 309  Q
    |||||||||||||||||| |||| ||||| ||||||| |||||||||  | ||||||||||||||    
T  31359300 caggaacttgttttctacctcatcggcacgcaatgacctgtaagttttctattataaatactaaa 31359236  T

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Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 31305427 - 31305325
Alignment:
Q  64 attattatcatattctaaatcaaagtatataacttgggtgtagagatctttcatacaataacttcagcattagccaagggagtcatatatgtcaagatca 163  Q
    |||||||||||| ||| |||| |||| ||| |||||  |  |||||||||||||||||||| |||||||| | | ||| || ||| | ||||||||||||    
T  31305427 attattatcataatctgaatcgaagtttatgacttgtatacagagatctttcatacaataatttcagcatcaacgaagtgaatcagaaatgtcaagatca 31305328  T
Q  164 aaa 166  Q
    |||    
T  31305327 aaa 31305325  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 31359445 - 31359377
Alignment:
Q  104 tagagatctttcatacaataacttcagcattagccaagggagtcatatatgtcaagatcaaaaagtgtaaga 175  Q
    |||||||||||||||||||||||||||||| |||   | || ||| | |||||||||| |||||||||||||    
T  31359445 tagagatctttcatacaataacttcagcatcagc---gagaatcagaaatgtcaagatgaaaaagtgtaaga 31359377  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 300
Target Start/End: Original strand, 31421086 - 31421157
Alignment:
Q  229 cttctccaatatggcacaggaacttgttttctacttcatgggcacacaatgacatgtaagtttggtgttata 300  Q
    |||||| |||||| |||||||| || |||||| | ||||||| || |||||||| ||||||||||| |||||    
T  31421086 cttctctaatatgtcacaggaatttattttctccctcatggggacgcaatgacacgtaagtttggtattata 31421157  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 31374029 - 31373984
Alignment:
Q  245 caggaacttgttttctacttcatgggcacacaatgacatgtaagtt 290  Q
    |||||| ||||||||||| |||||| || |||||||||||||||||    
T  31374029 caggaatttgttttctacctcatggacaaacaatgacatgtaagtt 31373984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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