View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_low_34 (Length: 409)
Name: NF11768_low_34
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 218 - 391
Target Start/End: Complemental strand, 47567686 - 47567513
Alignment:
| Q |
218 |
aaatggaggaaagccatgacaaaagagttttaaggttggtattgtatgtgttgtttggtgagtaatcataattagtgttgttgcttgaagttgaacagtt |
317 |
Q |
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| T |
47567686 |
aaatggaggaaagccatgacaaaagagttttaaggttggtattgtatgtgttgtttggtgagtaatcataattagtgttgttgcttgaagttgaacagtt |
47567587 |
T |
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| Q |
318 |
acagtaaggtagtggtgggtaatttatatatgcagagaaactgtggtaatatgattaaagaataatgtgagggt |
391 |
Q |
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| T |
47567586 |
acagtaaggtagtggtgggtaatttatatatgcagagaaactgtggtaatatgattaaagaataatgtgagggt |
47567513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 47567891 - 47567742
Alignment:
| Q |
13 |
agatgaaccattagttaattcactactcatgccaatcttaaatataagcaaaaagtcaaatgtatttgattcaaacgtttttaaatatacgtaaaaacga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47567891 |
agatgaaccattagttaattcactactcatgccaatcttaaatataagcaaaaagtcaaatgtatttgattcaaacgtttttaaatatacgtaaaaacga |
47567792 |
T |
|
| Q |
113 |
aaactgtgcttggtccaatttggacgtggcacatgaagaggccaaagata |
162 |
Q |
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| T |
47567791 |
aaactgtgcttggtccaatttggacttggcacatgaagaggccaaagata |
47567742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 40179921 - 40179887
Alignment:
| Q |
48 |
tcttaaatataagcaaaaagtcaaatgtatttgat |
82 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
40179921 |
tcttaaatataagcaaaaagtcaaatgtatttgat |
40179887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 27542729 - 27542693
Alignment:
| Q |
46 |
aatcttaaatataagcaaaaagtcaaatgtatttgat |
82 |
Q |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
27542729 |
aatcttaaatataaataaaaagtcaaatgtatttgat |
27542693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 4931643 - 4931603
Alignment:
| Q |
47 |
atcttaaatataagcaaaaagtcaaatgtatttgattcaaa |
87 |
Q |
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| T |
4931643 |
atcttaaatataaacaaaaagtcaaatgtatttgattcaaa |
4931603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 16850716 - 16850678
Alignment:
| Q |
48 |
tcttaaatataagcaaaaagtcaaatgtatttgattcaa |
86 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
16850716 |
tcttaaatataagcaaaaagtcaaatgtatttggttcaa |
16850678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 1048167 - 1048206
Alignment:
| Q |
48 |
tcttaaatataagcaaaaagtcaaatgtatttgattcaaa |
87 |
Q |
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|||||||||||||||||||||||| || |||||||||||| |
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| T |
1048167 |
tcttaaatataagcaaaaagtcaattgcatttgattcaaa |
1048206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 29037065 - 29037102
Alignment:
| Q |
48 |
tcttaaatataagcaaaaagtcaaatgtatttgattca |
85 |
Q |
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|||||| |||||||||||||||||||||||||| |||| |
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| T |
29037065 |
tcttaagtataagcaaaaagtcaaatgtatttggttca |
29037102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 32910693 - 32910657
Alignment:
| Q |
47 |
atcttaaatataagcaaaaagtcaaatgtatttgatt |
83 |
Q |
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||||||||||||| ||||||||||||| ||||||||| |
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| T |
32910693 |
atcttaaatataatcaaaaagtcaaatatatttgatt |
32910657 |
T |
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