View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11768_low_4 (Length: 663)
Name: NF11768_low_4
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 496
Target Start/End: Complemental strand, 30276332 - 30275858
Alignment:
| Q |
16 |
atgaatacacaagtcacgtaaaagatttcaaagtatctcaaagaagatttgacaatataatcatttgcatccagttgacaaaactagtagggacgaatca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
30276332 |
atgaatacacaagtcacgtaaaagatttcaaagtatttcgaagaagatttgacaatataatcatttgcatccagttgataaaactggtagggacgaatca |
30276233 |
T |
|
| Q |
116 |
aacatagagtttagtttgtctcacacacgttttagaattatttgtgcaactttcatcatcttcttcttgttcaagttatttatagtgtagacctcaacac |
215 |
Q |
| |
|
||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30276232 |
aacctaaagtttagtgtgtctcacacacgttttagaattatttgtgcaactttcatcatcttcttcttgttcaagttatttatagtgtagacctcaacac |
30276133 |
T |
|
| Q |
216 |
aagatcaaacatacatatagtttgtaagaaaataacattttatgatatgcttaacttgtattagtagaaaatcggtaagtgtaatagctaccaagaatga |
315 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30276132 |
aagatcaaacatatatatagtttgtaagaaaataacattttatgatatgcttaacttgtattagtagaaaatcggtaagtgtaatagctaccaagaatga |
30276033 |
T |
|
| Q |
316 |
acatnnnnnnnnnnnnnnttagtttttagaattgttt-aatcannnnnnnnnaa-ctctttagtgtatttcatcatccttgtagataccacnnnnnnnnn |
413 |
Q |
| |
|
|||| |||||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30276032 |
acat------aaaaaaaattagtttttaaaattgtttaaatcatttttttttaatctctttagtgtatttcatcatccttgtagataccac--aaaaaaa |
30275941 |
T |
|
| Q |
414 |
nngtatatttcgtcaactatgttattgggaacaccatatttatacaaagaacaatagtattttactc-ctttattttatttttc |
496 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30275940 |
aagtatatttcgtcaactatgttatt-ggaacaccatatttatacaaagaacaatagtattttactctctttattttatttttc |
30275858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 30275824 - 30275779
Alignment:
| Q |
527 |
acacaaatatcaggttgtgtcattaattaatcgattttactatttt |
572 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30275824 |
acacaaatatcaggctgtgtcattaattaatcgattttactatttt |
30275779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 607 - 645
Target Start/End: Complemental strand, 30275760 - 30275722
Alignment:
| Q |
607 |
acccaaaaaacacacttcacaacatttatttgatgtcac |
645 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30275760 |
acccaaaaaacacacttcacaacatttatttgatgtcac |
30275722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University