View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_low_41 (Length: 357)
Name: NF11768_low_41
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 29671310 - 29671649
Alignment:
| Q |
1 |
gcgacggtcatagcgaatgtcaagacccacatcatgaccttattcttaagggggaatccactaataaggagaagcacaacaccgagagaccaaaagaaag |
100 |
Q |
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| T |
29671310 |
gcgacggtcatagcgaatgtcaagacccacatcatgaccttattcttaagggggaatccactaataaggagaagcacaacaccgagagaccaaaagaaag |
29671409 |
T |
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| Q |
101 |
aaatggtgttgtatgtcatgaactttatgaattcatgtggccaggcataagctaaaactgcagtgccggcttcacataaaccataagtagtgcaattgag |
200 |
Q |
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| T |
29671410 |
aaatggtgttgtatgtcatgaactttatgaattcatgtggccaggcataagctaaaactgcagtgccggcttcacataaaccataagtagtgcaattgag |
29671509 |
T |
|
| Q |
201 |
tcctccagtaagtgtattttcttgccaaacaccacctggtggacttattgcggattgaaaagtcattgtggcaattacagttgccaccagcatcaatgtt |
300 |
Q |
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| T |
29671510 |
tcctccagtaagtgtattttcttgccaaacaccacctggtggacttattgcggattgaaaagtcattgtggcaattacagttgccaccagcatcaatgtt |
29671609 |
T |
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| Q |
301 |
ccccttgtttcttctatccaattaccttggaattgtagat |
340 |
Q |
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| T |
29671610 |
ccccttgtttcttctatccaattaccttggaattgtagat |
29671649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 39949295 - 39949224
Alignment:
| Q |
213 |
tgtattttcttgccaaacaccacctggtggacttattgcggattgaaaagtcattgtggcaattacagttgc |
284 |
Q |
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| T |
39949295 |
tgtatcttcttgccaaacaccgcctggtggacttattactgattgaaatgtcattgttgcgattacagttgc |
39949224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 39944950 - 39944879
Alignment:
| Q |
213 |
tgtattttcttgccaaacaccacctggtggacttattgcggattgaaaagtcattgtggcaattacagttgc |
284 |
Q |
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| T |
39944950 |
tgtatcttcttgccaaacaccgcccggtggactaattactgactgaaaagtcatagttgcaatcacagttgc |
39944879 |
T |
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