View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_low_42 (Length: 355)
Name: NF11768_low_42
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 40520124 - 40520450
Alignment:
| Q |
19 |
ttttattgattaatacttacataaaacaaataagcttgtgcaacagttggacatatccattccataaacactttcccatttaataaacttctcaacaacg |
118 |
Q |
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| T |
40520124 |
ttttattgattaatacttacataaaacaaataagcttgtgcaacagttggacatatccattccataaacactttcccatttaataaacttctcaacaacg |
40520223 |
T |
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| Q |
119 |
caacctgcaattccacaccaaaatttatcgaatgtaatcacatgtgtcagtgtcgaagcaatatacattcagtcaaatgtgtgaaagctacataaataat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40520224 |
caacctgcaattccacaccaaaatttatcgaatgtaatcacatgtgtcagtgtcgaagcaatatacattcagtcaaatgtgtgaaagctacataaataat |
40520323 |
T |
|
| Q |
219 |
cagtagtgagataattgttaccttggaaaatggctcagccacagaagcaaaactcatcagttctatggctgcaatggctcctgcaattgctccttttcca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40520324 |
cagtagtgagataattgttaccttggaaaatggctcagccacagaagcaaaactcatcagttctatggctgcaatggctcctgcaattgctccttttcca |
40520423 |
T |
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| Q |
319 |
gctccatcaagaaaaccagtttctgtg |
345 |
Q |
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| T |
40520424 |
gctccatcaagaaaaccagtttctgtg |
40520450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 40511163 - 40511284
Alignment:
| Q |
20 |
tttattgattaatacttacataaaacaaataagcttgtgcaacagttggacatatccattccataaacactttcccatttaataaacttctcaacaacgc |
119 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||||| || |
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| T |
40511163 |
tttatttattaatacttacataaaacaaataagcttctgcaacagttggacatatccattccgtaaatacttttccatttagtaaacttctcaacaaagc |
40511262 |
T |
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| Q |
120 |
aacctgcaattccacaccaaaa |
141 |
Q |
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||||| |||||||||||||||| |
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| T |
40511263 |
aacctacaattccacaccaaaa |
40511284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 232 - 345
Target Start/End: Original strand, 40511570 - 40511689
Alignment:
| Q |
232 |
attgttaccttggaaaatggctca------gccacagaagcaaaactcatcagttctatggctgcaatggctcctgcaattgctccttttccagctccat |
325 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
40511570 |
attgttaccttggaaaatggctcacccacggccacataagcaaaactcataaattctatggctgcaatggctcctgcaatcgctcctttgccagctccat |
40511669 |
T |
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| Q |
326 |
caagaaaaccagtttctgtg |
345 |
Q |
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||||||||||| ||||||| |
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| T |
40511670 |
caagaaaaccaacttctgtg |
40511689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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