View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11768_low_50 (Length: 282)
Name: NF11768_low_50
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_50 |
 | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 1042387 - 1042123
Alignment:
| Q |
1 |
tccaggagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgacttt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1042387 |
tccaggagaactgctcccaccgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgacttt |
1042288 |
T |
|
| Q |
101 |
caaacaaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctat |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1042287 |
caaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattctat |
1042188 |
T |
|
| Q |
201 |
tattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagttttt |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1042187 |
tattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagttttt |
1042123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 41193452 - 41193188
Alignment:
| Q |
1 |
tccaggagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgacttt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
41193452 |
tccaggagaactgctcccaccgtatgaaaccgagatattcgcggttgaagggttgaaatcaaacctgcaccaatccaacaatcaacactggtttgacttt |
41193353 |
T |
|
| Q |
101 |
caaacaaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctat |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41193352 |
caaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattctat |
41193253 |
T |
|
| Q |
201 |
tattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagttttt |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41193252 |
tattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagttttt |
41193188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 41200708 - 41200444
Alignment:
| Q |
1 |
tccaggagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgacttt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
41200708 |
tccaggagaactgctcccaccgtatgaaaccgagatattcgcggttgaagggttgaaatcaaacctgcaccaatccaacaatcaacactggtttgacttt |
41200609 |
T |
|
| Q |
101 |
caaacaaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctat |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41200608 |
caaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattctat |
41200509 |
T |
|
| Q |
201 |
tattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagttttt |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41200508 |
tattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagttttt |
41200444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 41408544 - 41408355
Alignment:
| Q |
23 |
tatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacacccctccga |
122 |
Q |
| |
|
||||||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| || |
|
|
| T |
41408544 |
tatgaaaccgagacatttgctgttgaagggatgaaatcaaacctgcagtagtccaacaatcaacagcggtttgactttcaaacaaaatatgcccctcgga |
41408445 |
T |
|
| Q |
123 |
ttcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaat |
212 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
41408444 |
ttcaacagaaaatgcgcaaagctcgcagtttatcggacaggaaaatacattgcaatattgaagagcatcttattgcattattacaacaat |
41408355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 33323978 - 33323714
Alignment:
| Q |
1 |
tccaggagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgacttt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
33323978 |
tccaggagaactgctcccaccgtatgaaaccgagatattcgcggttgaagggttgaaatcaaacctgcatcattccaacaatcaacactggtttgacttt |
33323879 |
T |
|
| Q |
101 |
caaacaaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctat |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33323878 |
caaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattctat |
33323779 |
T |
|
| Q |
201 |
tattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagttttt |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33323778 |
tattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagttttt |
33323714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 2401 - 2632
Alignment:
| Q |
1 |
tccaggagaactgctcccactgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgacttt |
100 |
Q |
| |
|
|||| |||||||| |||||| |||||||| ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
2401 |
tccacgagaactgttcccaccgtatgaaatcgagacatt-gatgttgaagggttgaaatcaaacctgcagtagtccaacaatcaacagtggtttgacttt |
2499 |
T |
|
| Q |
101 |
caaacaaaatacacccctccgattcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctat |
200 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||| || |
|
|
| T |
2500 |
caaacaaaatatgccccttggattcaacagaaaatgcgcaaagctcacagtttatcggacaggaaaatacattgcaattttgaagagcatcttattgcat |
2599 |
T |
|
| Q |
201 |
tattacaacaatctc-gcgaacttcatatcttt |
232 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| |
|
|
| T |
2600 |
tattacaacaatctcggtgaacttcatatcttt |
2632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 22911 - 23100
Alignment:
| Q |
23 |
tatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacacccctccga |
122 |
Q |
| |
|
||||||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| || |
|
|
| T |
22911 |
tatgaaaccgagacatttgctgttgaagggatgaaatcaaacctgcagtagtccaacaatcaacagcggtttgactttcaaacaaaatatgcccctcgga |
23010 |
T |
|
| Q |
123 |
ttcaacagaaaatggtcaaagctcacaatttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaat |
212 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
23011 |
ttcaacagaaaatgcgcaaagctcgcagtttatcggacaggaaaatacattgcaatattgaagagcatcttattgcattattacaacaat |
23100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University