View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11768_low_51 (Length: 276)
Name: NF11768_low_51
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11768_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 261
Target Start/End: Complemental strand, 11656071 - 11655831
Alignment:
| Q |
21 |
actccttgcccatcaattccacctgtgcaactcatgctagggagactcaaattctccaccatcgcaatatcgttgttgaatccgttattaccaacaaaac |
120 |
Q |
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| T |
11656071 |
actccttgcccatcaattccacttgtacaactcatgctagggagactcaaattctccaccatcgcaatatcattgttgaatccgtcattaccaacaaaac |
11655972 |
T |
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| Q |
121 |
gagctacggaacaatctggggagaacaagcttgaggtttcatactcttttccacctcccatcattggcatttttgcaccaatgttgacacgactcacata |
220 |
Q |
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| T |
11655971 |
gagctaccgaacaatctggggagaacaagcttgttgtttcatactcttttccacctcccattattggcatttttgctccaatgttcacacgactcacata |
11655872 |
T |
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| Q |
221 |
gttaggtttatatgtttggcccaacacaccactcacttcat |
261 |
Q |
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| T |
11655871 |
gttaggtttatatgtttggcccaacacaccacttacttcat |
11655831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 21 - 261
Target Start/End: Complemental strand, 11669839 - 11669599
Alignment:
| Q |
21 |
actccttgcccatcaattccacctgtgcaactcatgctagggagactcaaattctccaccatcgcaatatcgttgttgaatccgttattaccaacaaaac |
120 |
Q |
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| T |
11669839 |
actccttctccatcaacaccacttgtgcaactcatgctagggagcataagatcttccaccatcgcaatatcattgttgaatccgtcattaccaacaaaac |
11669740 |
T |
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| Q |
121 |
gagctacggaacaatctggggagaacaagcttgaggtttcatactcttttccacctcccatcattggcatttttgcaccaatgttgacacgactcacata |
220 |
Q |
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| T |
11669739 |
gagctacggaacaatctggggagaacaagcttgttgtttcatactcttttccacctcccattattggcattttcgctccaatgttcacacgactcacata |
11669640 |
T |
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| Q |
221 |
gttaggtttatatgtttggcccaacacaccactcacttcat |
261 |
Q |
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| T |
11669639 |
gttagatttatatgtttggcccaacacaccacttacttcat |
11669599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 261
Target Start/End: Complemental strand, 11664528 - 11664288
Alignment:
| Q |
21 |
actccttgcccatcaattccacctgtgcaactcatgctagggagactcaaattctccaccatcgcaatatcgttgttgaatccgttattaccaacaaaac |
120 |
Q |
| |
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||||||| ||||||||||||| |||||| |||| ||||||||| |||||||||||| || |||||| ||||| ||||| || || |||| |||| |
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| T |
11664528 |
actccttctccatcaattccacttgtgcagctcaagctagggagggccaaattctccacaattccaatatttttgtttaatccattgttcccaatgaaac |
11664429 |
T |
|
| Q |
121 |
gagctacggaacaatctggggagaacaagcttgaggtttcatactcttttccacctcccatcattggcatttttgcaccaatgttgacacgactcacata |
220 |
Q |
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| || || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
11664428 |
gtgccacagaacaatctggagagaacaagcttgaggtttcatactcttttccacctcccattattggcatttttgcaccaatgttcacacgactcacata |
11664329 |
T |
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| Q |
221 |
gttaggtttatatgtttggcccaacacaccactcacttcat |
261 |
Q |
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| T |
11664328 |
gttaggtttatatgtttggcccaacacaccatttacttcat |
11664288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 21 - 261
Target Start/End: Original strand, 7343968 - 7344208
Alignment:
| Q |
21 |
actccttgcccatcaattccacctgtgcaactcatgctagggagactcaaattctccaccatcgcaatatcgttgttgaatccgttattaccaacaaaac |
120 |
Q |
| |
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||||||| ||||||||||||| |||||| ||| ||||||||| ||||||||||| | ||||||| ||||| ||||| | || |||| |||| |
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| T |
7343968 |
actccttctccatcaattccacttgtgcatttcaagctagggagggccaaattctccatagttccaatatctttgtttaatccagtgtttccaatgaaac |
7344067 |
T |
|
| Q |
121 |
gagctacggaacaatctggggagaacaagcttgaggtttcatactcttttccacctcccatcattggcatttttgcaccaatgttgacacgactcacata |
220 |
Q |
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| T |
7344068 |
gtgctacagaacaatctggagagaacaagcttgacgtttcatactcttttgcaccgcccattattggcattcttgctccaatgttcacacgactcacata |
7344167 |
T |
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| Q |
221 |
gttaggtttatatgtttggcccaacacaccactcacttcat |
261 |
Q |
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| T |
7344168 |
gttaggtttatatgtttggcccaacacgccactcacttcat |
7344208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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