View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11768_low_53 (Length: 273)

Name: NF11768_low_53
Description: NF11768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11768_low_53
NF11768_low_53
[»] chr7 (5 HSPs)
chr7 (4-115)||(41749873-41749982)
chr7 (191-270)||(41750058-41750137)
chr7 (191-247)||(44549302-44549358)
chr7 (191-247)||(9059271-9059327)
chr7 (184-224)||(13861401-13861441)
[»] chr3 (2 HSPs)
chr3 (191-247)||(37681399-37681455)
chr3 (191-247)||(19226156-19226212)
[»] chr2 (2 HSPs)
chr2 (184-247)||(31525309-31525372)
chr2 (184-224)||(31517444-31517484)
[»] chr8 (3 HSPs)
chr8 (191-247)||(23870765-23870821)
chr8 (185-247)||(9183958-9184020)
chr8 (191-223)||(13760556-13760588)
[»] chr5 (1 HSPs)
chr5 (191-247)||(17705450-17705506)
[»] chr1 (6 HSPs)
chr1 (191-247)||(21967933-21967989)
chr1 (191-247)||(27972072-27972128)
chr1 (184-246)||(42561600-42561662)
chr1 (191-247)||(8050277-8050333)
chr1 (191-223)||(11461912-11461944)
chr1 (191-223)||(38339797-38339829)
[»] chr4 (1 HSPs)
chr4 (184-220)||(4379889-4379925)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 41749873 - 41749982
Alignment:
Q  4 agactaaaattataattttgcccatatatatattagcagaaagatggatatttgtgtgttcatcttttcaannnnnnnattgtgataatgtttgtaaatt 103  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||       ||||| ||||||||||||||||    
T  41749873 agactaaaattataattttgcccatat--atattagcagaaagatggatatttgtgtgttcatcttttcaatttttttattgtaataatgtttgtaaatt 41749970  T
Q  104 attaatgacatc 115  Q
    ||||||||||||    
T  41749971 attaatgacatc 41749982  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 41750058 - 41750137
Alignment:
Q  191 aaaaaatcatgtttatctttttcaaaaacaacaacaatctaaacaatataatataaagggaaatgatatttgaacaacca 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  41750058 aaaaaatcatgtttatctttttcaaaaacaacaacaatctaaacaatataatataaagagaaatgatatttaaacaacca 41750137  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 44549302 - 44549358
Alignment:
Q  191 aaaaaatcatgtttatctttttcaaaaacaacaacaatctaaacaatataatataaa 247  Q
    ||||||||||||||||||||||||| |||| ||| ||| |||  |||||||||||||    
T  44549302 aaaaaatcatgtttatctttttcaataacatcaataatataacaaatataatataaa 44549358  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 9059271 - 9059327
Alignment:
Q  191 aaaaaatcatgtttatctttttcaaaaacaacaacaatctaaacaatataatataaa 247  Q
    |||||| |||||||||||||||||| |||||||  ||| |||  |||||||||||||    
T  9059271 aaaaaaccatgtttatctttttcaataacaacagtaatttaataaatataatataaa 9059327  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 13861401 - 13861441
Alignment:
Q  184 caaacttaaaaaatcatgtttatctttttcaaaaacaacaa 224  Q
    |||||| |||||| |||||||||||||||||| ||||||||    
T  13861401 caaactcaaaaaaccatgtttatctttttcaataacaacaa 13861441  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 37681455 - 37681399
Alignment:
Q  191 aaaaaatcatgtttatctttttcaaaaacaacaacaatctaaacaatataatataaa 247  Q
    ||||||||||||||||||||||||| |||||||| ||| |||  |||||||||||||    
T  37681455 aaaaaatcatgtttatctttttcaataacaacaataatttaacaaatataatataaa 37681399  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 19226212 - 19226156
Alignment:
Q  191 aaaaaatcatgtttatctttttcaaaaacaacaacaatctaaacaatataatataaa 247  Q
    |||||| ||||||||||||||||||  ||||||| ||| |||  |||||||||||||    
T  19226212 aaaaaaccatgtttatctttttcaatgacaacaataatttaacaaatataatataaa 19226156  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 31525372 - 31525309
Alignment:
Q  184 caaacttaaaaaatcatgtttatctttttcaaaaacaacaacaatctaaacaatataatataaa 247  Q
    |||||| |||||| ||||||||||||||||||||||||||| ||  |||  |||||||||||||    
T  31525372 caaactcaaaaaaccatgtttatctttttcaaaaacaacaataagttaacaaatataatataaa 31525309  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 31517484 - 31517444
Alignment:
Q  184 caaacttaaaaaatcatgtttatctttttcaaaaacaacaa 224  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  31517484 caaacataaaaaaccatgtttatctttttcaaaaacaacaa 31517444  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 23870821 - 23870765
Alignment:
Q  191 aaaaaatcatgtttatctttttcaaaaacaacaacaatctaaacaatataatataaa 247  Q
    ||||| ||||||||||||||||||| |||||||| ||| |||  |||||||||||||    
T  23870821 aaaaattcatgtttatctttttcaataacaacaataatttaacaaatataatataaa 23870765  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 9183958 - 9184020
Alignment:
Q  185 aaacttaaaaaatcatgtttatctttttcaaaaacaacaacaatctaaacaatataatataaa 247  Q
    ||||| || |||||||||||||||||||||| ||||||||  || |||  |||||||||||||    
T  9183958 aaactaaataaatcatgtttatctttttcaataacaacaattatataacaaatataatataaa 9184020  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 13760588 - 13760556
Alignment:
Q  191 aaaaaatcatgtttatctttttcaaaaacaaca 223  Q
    ||||||||||||||||||||||||| |||||||    
T  13760588 aaaaaatcatgtttatctttttcaataacaaca 13760556  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 17705506 - 17705450
Alignment:
Q  191 aaaaaatcatgtttatctttttcaaaaacaacaacaatctaaacaatataatataaa 247  Q
    ||||||||||||||||||||||||| ||||| || ||| |||  |||||||||||||    
T  17705506 aaaaaatcatgtttatctttttcaataacaagaataatttaacaaatataatataaa 17705450  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 21967989 - 21967933
Alignment:
Q  191 aaaaaatcatgtttatctttttcaaaaacaacaacaatctaaacaatataatataaa 247  Q
    |||||||||||||||| |||||||| |||| ||| ||| |||| |||||||||||||    
T  21967989 aaaaaatcatgtttatttttttcaataacagcaataatataaaaaatataatataaa 21967933  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 27972072 - 27972128
Alignment:
Q  191 aaaaaatcatgtttatctttttcaaaaacaacaacaatctaaacaatataatataaa 247  Q
    ||||||||||||||||||||||||| |||||||| ||| |||  ||| |||||||||    
T  27972072 aaaaaatcatgtttatctttttcaataacaacaataatttaacaaatttaatataaa 27972128  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 42561600 - 42561662
Alignment:
Q  184 caaacttaaaaaatcatgtttatctttttcaaaaacaacaacaatctaaacaatataatataa 246  Q
    ||||||||| ||| ||||||||| ||||||||||||| |||| ||||||  | ||||||||||    
T  42561600 caaacttaacaaaccatgtttatttttttcaaaaacaccaacgatctaacaagtataatataa 42561662  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 8050277 - 8050333
Alignment:
Q  191 aaaaaatcatgtttatctttttcaaaaacaacaacaatctaaacaatataatataaa 247  Q
    ||||||||||||||||||||||||| | |||||| |||   || |||||||||||||    
T  8050277 aaaaaatcatgtttatctttttcaatagcaacaaaaattgtaaaaatataatataaa 8050333  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 11461912 - 11461944
Alignment:
Q  191 aaaaaatcatgtttatctttttcaaaaacaaca 223  Q
    ||||||||||||||||||||||||| |||||||    
T  11461912 aaaaaatcatgtttatctttttcaataacaaca 11461944  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 38339797 - 38339829
Alignment:
Q  191 aaaaaatcatgtttatctttttcaaaaacaaca 223  Q
    ||||||||||||||||||||||||| |||||||    
T  38339797 aaaaaatcatgtttatctttttcaataacaaca 38339829  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 4379889 - 4379925
Alignment:
Q  184 caaacttaaaaaatcatgtttatctttttcaaaaaca 220  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  4379889 caaacttaacaaatcatgtttatctttttcaataaca 4379925  T

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